Rv0006 - c.2014C>T
Drug resistance types
28 Sensitive
3 RR-TB
15 HR-TB
17 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
43 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 12 |
| lineage1.1.3.1 | 23 |
| lineage4.6.3;lineage4.9 | 1 |
| 1 | |
| lineage4.6.4;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 1 |
| lineage4.3.4.1 | 2 |
| M.canetti;lineage4.6.4;lineage4.9 | 2 |
| lineage1.1.1 | 3 |
| lineage6.1.1 | 2 |
| lineage3.1.2.1;lineage3.1.2.2 | 1 |
| La1.7;lineage4.9 | 5 |
| La2;lineage4.9 | 1 |
| La1.4 | 1 |
| La1.7 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.9;lineage9 | 2 |
| lineage4.1.1.3 | 2 |
| lineage1.1.2 | 4 |
| La1;lineage4.9 | 1 |
| lineage2.2.1.1 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 3 |
| lineage3.1.2 | 1 |
| M.canetti;lineage4.2 | 1 |
| lineage1.1.2;lineage1.1.3.1 | 4 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La3;lineage2.1;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La3;lineage4.9 | 5 |
| lineage3 | 1 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage2.2.1 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 108 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR176751 | Other | lineage4.9 | None | SRR29097026 | Other | lineage4.9 | None | SRR8649123 | Sensitive | lineage1.1.3.1 | None | SRR29097037 | Other | lineage4.9 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR987722 | MDR-TB | None | ERR212033 | Other | lineage4.9 | None | ERR4188322 | Other | lineage4.6.4;lineage4.9 | None | SRR11972340 | Sensitive | lineage1.1.3.1 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR6326069 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR3439432 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | SRR3675586 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | ERR2517233 | Other | lineage1.1.1 | nl | ERR9787014 | Other | lineage6.1.1 | None | ERR987729 | HR-TB | lineage3.1.2.1;lineage3.1.2.2 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR4829357 | Sensitive | lineage1.1.3.1 | None | ERR2815545 | Other | La1.4 | None | ERR4830353 | Other | La1.7 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | SAMEA2533358 | MDR-TB | lineage4.1.1.3 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | SRR29053354 | Sensitive | lineage1.1.3.1 | None | ERR11067256 | Sensitive | lineage1.1.2 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR21277618 | Sensitive | lineage2.2.1.1 | None | ERR5530521 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR2446491 | Other | lineage1.1.1 | nl | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR4553416 | HR-TB | lineage1.1.3.1 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR21736949 | Other | lineage3.1.2 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR29017616 | MDR-TB | lineage1.1.3.1 | None | ERR3275325 | Other | lineage1.1.1 | nl | SRR28858385 | Sensitive | lineage1.1.2 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | SRR29056239 | Sensitive | lineage1.1.3.1 | None | SRR28351451 | Sensitive | lineage1.1.2;lineage1.1.3.1 | None | ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | SRR6797570 | Sensitive | lineage1.1.3.1 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | SRR6797549 | Sensitive | lineage1.1.3.1 | None | SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR1165628 | Other | La3;lineage4.9 | None | SRR1169249 | Other | lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | SRR26399490 | Sensitive | lineage4.9 | None | ERR4798504 | RR-TB | lineage3 | None | ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | ERR13266788 | Sensitive | lineage1.1.3.1 | None | SRR21661627 | Sensitive | lineage1.1.3.1 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | SRR7829242 | Sensitive | lineage1.1.3.1 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | SRR6044835 | Other | lineage4.9 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | SRR3675390 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR11252612 | Other | La3;lineage4.9 | None | SRR6797494 | Sensitive | lineage1.1.3.1 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR6832787 | Sensitive | lineage2.2.1 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR26056427 | Sensitive | lineage1.1.2 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR29096410 | Other | lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR18289184 | Sensitive | lineage1.1.3.1 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR4828876 | Sensitive | lineage1.1.3.1 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR6797695 | HR-TB | lineage1.1.3.1 | None | SRR6650206 | HR-TB | lineage1.1.3.1 | None | ERR7902757 | HR-TB | lineage1.1.3.1 | None | ERR5311103 | RR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | None | SRR21675446 | Sensitive | lineage1.1.3.1 | None | ERR3077967 | MDR-TB | lineage1.1.3.1 | None | SRR25340963 | Sensitive | lineage1.1.2 | None | SRR29055449 | Sensitive | lineage1.1.2;lineage1.1.3.1 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR29052715 | Sensitive | lineage1.1.3.1 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR13291194 | Sensitive | lineage1.1.2;lineage1.1.3.1 | None | SRR12882052 | Sensitive | lineage1.1.3.1 | None | SRR16089403 | Sensitive | lineage1.1.2;lineage1.1.3.1 | None | ERR1035136 | Sensitive | lineage1.1.3.1 | sa | ERR176643 | Other | La3;lineage4.9 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR29096150 | Other | lineage4.9 | None |
|---|
