Rv0005 - c.984G>C
Drug resistance types
75 Sensitive
3 RR-TB
127 HR-TB
12 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
78 Other
lineage Counts
| lineage | Count |
|---|---|
| 110 | |
| lineage4.9 | 54 |
| lineage4.4.1.1 | 2 |
| lineage4 | 67 |
| lineage2.2.1.1 | 1 |
| lineage2.2.1 | 11 |
| lineage4.5 | 2 |
| lineage2.2 | 8 |
| lineage1.2.1.2 | 1 |
| lineage1.1.1 | 1 |
| lineage4;lineage2.2 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage4.1 | 2 |
| La1.8.1 | 3 |
| lineage4.1.1.3 | 2 |
| lineage3;lineage2.1 | 1 |
| lineage4.3.4 | 2 |
| lineage4.3 | 1 |
| lineage4.1.1 | 1 |
| lineage3 | 1 |
| lineage4.2.1 | 1 |
| lineage4.6.2.2 | 2 |
| lineage3.1 | 2 |
| lineage4.1.2.1 | 10 |
| lineage1.1 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.6.1.1 | 2 |
| La1 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.3.3 | 2 |
| lineage4.3.2 | 1 |
| lineage4.1.2.1.1 | 1 |
| lineage4.8;lineage4.1 | 1 |
| lineage6 | 1 |
| La3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 300 |
Geographic prevalence
Country level data for this variant is available for 3 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1169306 | Other | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1175508 | Other | lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR13423544 | Other | lineage4.5 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR13837544 | Sensitive | lineage4.9 | None | SRR13837684 | Sensitive | lineage4.9 | None | SRR13861151 | RR-TB | lineage4.9 | None | SRR14782405 | HR-TB | None | SRR13861261 | Sensitive | lineage4.9 | None | SRR13861266 | Sensitive | lineage4.9 | None | SRR13861413 | Sensitive | lineage4.9 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR13861556 | Other | lineage4.9 | None | SRR13861573 | Other | lineage4.9 | None | SRR13861571 | RR-TB | lineage4.9 | None | SRR13861611 | Sensitive | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR13861415 | Other | lineage4.9 | None | SRR13861686 | RR-TB | lineage4.9 | None | SRR13861699 | Sensitive | lineage4.9 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR1640750 | HR-TB | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR8692807 | Other | lineage4.9 | None | SRR8692905 | HR-TB | None | SRR8692825 | Other | lineage4.9 | None | SRR1791696 | Other | La1.8.1 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR8692897 | Other | lineage4.9 | None | SRR8692887 | Other | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR176778 | HR-TB | None | ERR176779 | HR-TB | None | SRR3675477 | Other | lineage4.9 | None | ERR1035239 | HR-TB | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | SRR6325445 | HR-TB | None | SRR3675482 | HR-TB | None | ERR161033 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3675486 | HR-TB | None | SRR3675488 | HR-TB | None | SRR3675229 | Other | lineage4 | None | ERR181744 | HR-TB | None | SRR3675501 | HR-TB | None | SRR3675222 | Other | None | SRR3675510 | Other | None | SRR3675234 | Other | None | SRR3675265 | Other | lineage4 | None | ERR176568 | Other | lineage4.3 | None | ERR176643 | HR-TB | None | ERR176651 | HR-TB | None | SRR3675383 | HR-TB | None | SRR3675456 | HR-TB | None | ERR176751 | HR-TB | None | SRR3675455 | Sensitive | lineage4 | None | ERR181824 | HR-TB | lineage4 | None | SRR3675266 | Sensitive | lineage4.9 | None | SRR3675270 | HR-TB | None | SRR3675279 | Other | None | SRR3675284 | HR-TB | lineage4.9 | None | ERR181887 | HR-TB | None | SRR3675387 | Sensitive | None | SRR3675522 | Other | None | SRR3675514 | Sensitive | lineage4.9 | None | ERR212033 | HR-TB | None | SRR3675545 | HR-TB | None | ERR212001 | HR-TB | None | SRR3675555 | HR-TB | None | SRR3675541 | Sensitive | lineage4.9 | None | ERR212125 | HR-TB | lineage4 | None | SRR3675558 | HR-TB | None | ERR212123 | Other | None | ERR212138 | HR-TB | lineage4 | None | SRR3675571 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4816466 | HR-TB | None | ERR2229143 | Other | lineage4.1.1 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4817998 | Other | lineage3 | None | ERR4818536 | Other | lineage4.9 | None | ERR1035138 | MDR-TB | None | ERR4819462 | Other | lineage4 | None | ERR2693231 | Other | None | ERR6359082 | Other | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR2693257 | Other | None | ERR2693230 | Other | None | ERR2693239 | HR-TB | None | SRR6045503 | HR-TB | None | ERR2693254 | Other | None | ERR278594 | HR-TB | None | SRR6045519 | HR-TB | None | SRR6046141 | Other | lineage4.9 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6045706 | Sensitive | lineage4 | None | ERR2693232 | Other | lineage4.9 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6045053 | Other | None | SRR6046046 | Other | None | SRR6045952 | HR-TB | None | SRR6046210 | Other | lineage4 | None | SRR6046245 | Other | lineage4.9 | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6325444 | HR-TB | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6046385 | Other | lineage4.9 | None | ERR3275196 | Other | lineage2.2.1 | nl | SRR6046382 | HR-TB | lineage2.2.1 | None | ERR2446563 | Other | lineage2.2.1 | nl | SRR6046611 | HR-TB | lineage4.9 | None | ERR4830353 | Other | None | SRR6325448 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6325447 | HR-TB | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | ERR323034 | HR-TB | lineage3.1 | None | SRR6046897 | Sensitive | lineage4 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6325442 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | ERR323037 | HR-TB | lineage4 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR4831117 | HR-TB | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR502943 | HR-TB | None | ERR294266 | HR-TB | None | ERR294248 | HR-TB | None | ERR323036 | HR-TB | None | ERR5311090 | HR-TB | None | ERR5311081 | HR-TB | None | ERR5311099 | HR-TB | None | ERR323038 | HR-TB | None | ERR323041 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323045 | HR-TB | None | ERR323055 | HR-TB | None | ERR323063 | HR-TB | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR1023525 | HR-TB | lineage4 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1034652 | Other | None | ERR1063858 | HR-TB | None | ERR1063862 | HR-TB | None | ERR1063855 | Other | lineage4 | None | ERR1063857 | HR-TB | None | ERR1063859 | HR-TB | None | ERR3283017 | HR-TB | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR3283010 | Other | La1 | None | ERR108471 | HR-TB | lineage4 | None | ERR3283014 | HR-TB | None | ERR3283028 | Other | None | ERR3283021 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3283024 | Other | None | ERR3283031 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283047 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3445501 | HR-TB | None | ERR3445503 | HR-TB | None | ERR349265 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR349298 | Sensitive | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR349330 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR363509 | Sensitive | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR369159 | Sensitive | lineage4 | None | ERR369158 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369162 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR3797017 | Other | None | ERR373947 | Sensitive | lineage4 | None | ERR3797016 | HR-TB | None | ERR3797014 | Other | None | ERR3797067 | Other | La1.8.1 | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797044 | Other | None | ERR3797048 | HR-TB | None | ERR3797061 | Other | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797087 | Sensitive | lineage4 | None | ERR3797063 | HR-TB | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR3797083 | HR-TB | None | ERR3797086 | Other | lineage4.9 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR387051 | HR-TB | None | ERR400320 | Sensitive | lineage4 | None | ERR400326 | Sensitive | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR400345 | Other | lineage4 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4188350 | HR-TB | None | ERR473332 | Other | lineage4 | None | ERR4769450 | HR-TB | None | ERR4769452 | HR-TB | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769521 | HR-TB | None | ERR4798431 | HR-TB | None | ERR4797129 | Sensitive | lineage1.2.2.2 | in | ERR4797313 | HR-TB | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4799025 | Pre-XDR-TB | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR6359066 | HR-TB | lineage4 | None | ERR4811493 | HR-TB | None | ERR4812155 | Sensitive | None | ERR5908228 | Other | lineage4.3.3 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6358837 | HR-TB | None | ERR4811030 | Sensitive | None | ERR6358979 | Other | None | ERR6359069 | Other | lineage4.9 | None | ERR6359070 | Other | lineage4.9 | None | ERR6866807 | HR-TB | lineage4 | None | ERR6865502 | Sensitive | lineage4 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736856 | HR-TB | lineage4 | None | ERR736839 | Other | None | ERR736831 | HR-TB | lineage4.9 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR736875 | HR-TB | lineage4 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR8976043 | HR-TB | None | ERR9119096 | Other | lineage4.3.3 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9119669 | HR-TB | None | ERR9786843 | Other | None | ERR9787030 | Sensitive | lineage6 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1169249 | Other | La3 | None | SRR1167384 | Other | lineage4 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1167055 | Other | lineage4.1.2.1 | None |
|---|
