lineage | Count |
---|---|
lineage4.1.1.3 | 186 |
lineage2.2.1 | 17 |
4 | |
lineage4.6.4 | 2 |
lineage4.3.4.2 | 2 |
lineage4.3.4.1 | 4 |
lineage2.2.2 | 2 |
lineage4.8;lineage4.1.1.3 | 3 |
lineage4.1.1 | 3 |
lineage4 | 3 |
lineage2.2.1.1 | 1 |
lineage4.3.4.2.1 | 1 |
lineage4.2.1 | 2 |
lineage4.4 | 1 |
lineage4.2.1;lineage2.2.1 | 1 |
lineage4.9 | 2 |
lineage4.1.2.1 | 1 |
lineage4.2.2 | 2 |
lineage4.3.3 | 5 |
lineage4.2.2.2 | 1 |
lineage4.3 | 1 |
lineage3.1.2 | 1 |
lineage2.2 | 1 |
spoligotype | Count |
---|---|
None | 246 |
ID | Drug resistance | Lineage | Country iso2 | ERR7737692 | MDR-TB | lineage4.1.1.3 | None | ERR7737679 | MDR-TB | lineage4.1.1.3 | None | ERR7911490 | MDR-TB | lineage2.2.1 | vn | ERR7737897 | MDR-TB | lineage4.1.1.3 | None | ERR8975739 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR8774397 | MDR-TB | lineage4.1.1.3 | None | ERR987722 | HR-TB | None | ERR8976048 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9119558 | MDR-TB | lineage4.6.4 | None | ERR9907696 | MDR-TB | lineage4.3.4.2 | None | ERR9992762 | XDR-TB | lineage4.1.1.3 | None | ERR9907795 | MDR-TB | lineage4.3.4.1 | None | ERR9907798 | MDR-TB | lineage4.3.4.1 | None | ERR9907778 | MDR-TB | lineage4.3.4.1 | None | ERR11050143 | MDR-TB | lineage2.2.1 | None | ERR9992638 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9992709 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9993054 | XDR-TB | lineage4.1.1.3 | None | ERR9992924 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9993044 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9992929 | XDR-TB | lineage4.1.1.3 | None | ERR9993037 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9993087 | XDR-TB | lineage4.1.1.3 | None | ERR9993128 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1011465 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9993121 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR11349140 | MDR-TB | lineage4.1.1.3 | None | SRR1019158 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1048010 | Pre-XDR-TB | lineage2.2.2 | None | SRR11349141 | MDR-TB | lineage4.1.1.3 | None | SRR1019151 | MDR-TB | lineage4.1.1.3 | None | SRR10315667 | MDR-TB | lineage4.1.1.3 | None | SRR10315721 | MDR-TB | lineage4.1.1.3 | None | SRR10315722 | MDR-TB | lineage4.1.1.3 | None | SRR1062837 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1062841 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR10869076 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR11349150 | MDR-TB | lineage4.1.1.3 | None | SRR1140951 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1140965 | MDR-TB | lineage4.1.1.3 | None | SRR1144771 | Pre-XDR-TB | lineage2.2.2 | None | SRR1165274 | MDR-TB | lineage4.1.1.3 | None | SRR1165209 | MDR-TB | lineage4.1.1.3 | None | SRR1165631 | MDR-TB | lineage4.1.1.3 | None | SRR1165306 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1165328 | MDR-TB | lineage4.1.1.3 | None | SRR1165336 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1165663 | MDR-TB | lineage4.1.1.3 | None | SRR1167271 | MDR-TB | lineage4.1.1.3 | None | SRR1165673 | MDR-TB | lineage4.1.1.3 | None | SRR1165669 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1165695 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1167260 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1167266 | MDR-TB | lineage4.1.1.3 | None | SRR1165675 | MDR-TB | lineage4.1.1.3 | None | SRR1165683 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1165691 | MDR-TB | lineage4.1.1.3 | None | SRR1165713 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1165714 | MDR-TB | lineage4.1.1.3 | None | SRR1167333 | MDR-TB | lineage4.1.1.3 | None | SRR1167279 | MDR-TB | lineage4.8;lineage4.1.1.3 | None | SRR1167307 | MDR-TB | lineage4.1.1 | None | SRR1167366 | MDR-TB | lineage4.1.1.3 | None | SRR1167368 | MDR-TB | lineage4.1.1.3 | None | SRR1167338 | MDR-TB | lineage4.1.1.3 | None | SRR1169204 | MDR-TB | lineage4.1.1.3 | None | SRR1169167 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1169190 | MDR-TB | lineage4.1.1.3 | None | SRR1169189 | MDR-TB | lineage4.1.1.3 | None | SRR1169203 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1169241 | MDR-TB | lineage4.1.1.3 | None | SRR1169256 | MDR-TB | lineage4.1.1.3 | None | SRR1169261 | MDR-TB | lineage4.1.1.3 | None | SRR1173032 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1169272 | MDR-TB | lineage4.1.1.3 | None | SRR1169289 | MDR-TB | lineage4.1.1.3 | None | SRR1172247 | MDR-TB | lineage4.1.1.3 | None | SRR1172330 | MDR-TB | lineage4.1.1.3 | None | SRR1169301 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1172306 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1172836 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1173213 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1173407 | MDR-TB | lineage4.1.1.3 | None | SRR1173441 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1173624 | MDR-TB | lineage4.1.1.3 | None | SRR1173456 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1173587 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1173554 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1173736 | MDR-TB | lineage4.1.1.3 | None | SRR1173724 | MDR-TB | lineage4.8;lineage4.1.1.3 | None | SRR1173737 | MDR-TB | lineage4.1.1.3 | None | SRR1173876 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1173861 | MDR-TB | lineage4.8;lineage4.1.1.3 | None | SRR1180940 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1180152 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1180232 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1184019 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1183090 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1181086 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1181322 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1183001 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1184339 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1196541 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR22424762 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR18909927 | HR-TB | lineage4.3.4.2.1 | None | SRR14801454 | Pre-XDR-TB | lineage4.2.1 | None | SRR18054809 | Pre-XDR-TB | lineage4.4 | None | ERR11081224 | MDR-TB | lineage4.2.1;lineage2.2.1 | None | ERR11081032 | MDR-TB | lineage2.2.1 | None | ERR11081452 | MDR-TB | lineage2.2.1 | None | ERR11081254 | MDR-TB | lineage2.2.1 | None | ERR11081813 | XDR-TB | lineage2.2.1 | None | ERR9806692 | MDR-TB | lineage4.1.1.3 | None | ERR9806767 | Pre-XDR-TB | None | ERR9806733 | MDR-TB | lineage4 | None | ERR9806781 | MDR-TB | lineage4.1.1 | None | ERR10610103 | Pre-XDR-TB | None | ERR9806791 | MDR-TB | lineage4.9 | None | ERR10610061 | MDR-TB | lineage4.9 | None | ERR10610193 | MDR-TB | lineage4.1.1 | None | ERR550813 | MDR-TB | lineage4.1.1.3 | sz | ERR10610174 | MDR-TB | lineage4 | None | ERR10610374 | MDR-TB | lineage4.1.1.3 | None | ERR551246 | MDR-TB | lineage4.1.1.3 | sz | ERR4896315 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR553186 | MDR-TB | lineage4.1.1.3 | sz | ERR553328 | MDR-TB | lineage4.1.1.3 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | ERR550864 | MDR-TB | lineage4.1.1.3 | sz | ERR552994 | MDR-TB | lineage4.1.1.3 | sz | SAMN02403541 | MDR-TB | lineage4.1.1.3 | za | SAMN02350483 | Pre-XDR-TB | lineage4.1.1.3 | za | SAMN02403576 | Pre-XDR-TB | lineage4.1.1.3 | None | SAMN02585963 | Pre-XDR-TB | lineage4.1.1.3 | za | SAMN02403546 | MDR-TB | lineage4.1.1.3 | za | SAMN02403522 | MDR-TB | lineage4.1.1.3 | za | ERR550734 | MDR-TB | lineage4.1.1.3 | sz | ERR552720 | MDR-TB | lineage4.1.1.3 | sz | SAMN02350428 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR553105 | MDR-TB | lineage4.1.1.3 | sz | ERR552917 | MDR-TB | lineage4.1.1.3 | sz | SAMN02403533 | MDR-TB | lineage4.1.1.3 | za | ERR552075 | MDR-TB | lineage4.1.1.3 | None | SRR5067704 | MDR-TB | lineage2.2.1 | vn | ERR552296 | Pre-XDR-TB | lineage4.1.1.3 | sz | ERR230005 | MDR-TB | lineage2.2.1 | ru | ERR552151 | MDR-TB | lineage4.1.1.3 | sz | ERR2433008 | Pre-XDR-TB | lineage4.1.1.3 | None | SAMN02350472 | MDR-TB | lineage4.1.1.3 | za | SAMN02586027 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR2515346 | MDR-TB | lineage4.1.1.3 | za | SAMN02403545 | Pre-XDR-TB | lineage4.1.1.3 | None | SAMN02403523 | MDR-TB | lineage4.1.1.3 | za | ERR2515386 | MDR-TB | lineage4.1.1.3 | za | SRR5485518 | MDR-TB | None | ERR2516454 | MDR-TB | lineage4.1.2.1 | None | ERR553028 | MDR-TB | lineage4.1.1.3 | sz | SAMN02053765 | MDR-TB | lineage4.1.1.3 | za | ERR2515597 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR2515425 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR552361 | MDR-TB | lineage4.1.1.3 | sz | ERR550959 | MDR-TB | lineage4.1.1.3 | sz | ERR2515479 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR2515990 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR2179671 | MDR-TB | lineage4.2.2 | cn | SAMN02585992 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR551938 | MDR-TB | lineage4.1.1.3 | sz | ERR2515794 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR2515826 | Pre-XDR-TB | lineage4.1.1.3 | za | SAMN02403532 | Pre-XDR-TB | lineage4.1.1.3 | za | SAMN02585970 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR553264 | MDR-TB | lineage4.1.1.3 | sz | ERR553343 | MDR-TB | lineage4.1.1.3 | sz | ERR552751 | MDR-TB | lineage4.1.1.3 | sz | ERR2515262 | Pre-XDR-TB | lineage4.1.1.3 | None | SAMN02403525 | Pre-XDR-TB | lineage4.1.1.3 | None | SAMN02403542 | MDR-TB | lineage4.1.1.3 | za | ERR4830531 | MDR-TB | lineage4.1.1.3 | None | ERR553354 | MDR-TB | lineage4.1.1.3 | sz | SAMN02403577 | MDR-TB | lineage4.1.1.3 | za | SRR23310848 | Pre-XDR-TB | lineage4.2.1 | None | ERR4830532 | MDR-TB | lineage4.1.1.3 | za | ERR551241 | MDR-TB | lineage4.1.1.3 | sz | ERR4830549 | MDR-TB | lineage4.1.1.3 | None | ERR4972493 | MDR-TB | lineage4.3.3 | None | SRR6356954 | Pre-XDR-TB | lineage2.2.1 | None | SRR6256971 | Pre-XDR-TB | lineage2.2.1 | None | ERR4972524 | MDR-TB | lineage4.3.3 | None | ERR4972510 | Pre-XDR-TB | lineage4.3.3 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | ERR4972529 | MDR-TB | lineage4.3.3 | None | ERR4872156 | MDR-TB | lineage4.6.4 | None | SRR6832114 | MDR-TB | lineage2.2.1 | None | ERR552073 | MDR-TB | lineage4.1.1.3 | sz | SAMN02350424 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR502886 | MDR-TB | lineage2.2.1 | None | SRR924217 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR9971331 | MDR-TB | lineage4.1.1.3 | None | ERR4972528 | Pre-XDR-TB | lineage4.3.3 | None | SRR671755 | Pre-XDR-TB | lineage2.2.1 | cn | SRR6896240 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR551393 | MDR-TB | lineage4.1.1.3 | sz | ERR552288 | MDR-TB | lineage4.1.1.3 | sz | ERR553204 | MDR-TB | lineage4.1.1.3 | sz | SRR6930924 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR9971237 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR9971246 | MDR-TB | lineage4.1.1.3 | None | SRR833068 | MDR-TB | lineage4.1.1.3 | None | SRR833056 | MDR-TB | lineage4.1.1.3 | None | SRR9971369 | MDR-TB | lineage4.1.1.3 | None | SRR9971048 | MDR-TB | lineage4.1.1.3 | None | SRR9971378 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR847790 | Pre-XDR-TB | lineage4.1.1.3 | za | SRR9971038 | MDR-TB | lineage4.1.1.3 | None | SRR9971050 | MDR-TB | lineage4.1.1.3 | None | SRR9971086 | MDR-TB | lineage4.1.1.3 | None | ERR3324372 | MDR-TB | lineage4.3.4.1 | None | SRR1724011 | MDR-TB | lineage4.2.2 | cn | SRR9971128 | MDR-TB | lineage4.1.1.3 | None | SRR9971181 | MDR-TB | lineage4.1.1.3 | None | ERR10748507 | MDR-TB | lineage2.2.1 | None | ERR4020191 | MDR-TB | lineage4.1.1.3 | None | ERR4020196 | MDR-TB | lineage4.1.1.3 | None | ERR3794532 | MDR-TB | lineage2.2.1 | None | ERR4020192 | MDR-TB | lineage4.1.1.3 | None | ERR4020193 | MDR-TB | lineage4.1.1.3 | None | ERR4020195 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4020194 | MDR-TB | lineage4.1.1.3 | None | ERR4809073 | MDR-TB | lineage4.1.1.3 | za | ERR4796976 | Pre-XDR-TB | lineage4.2.2.2 | in | ERR4800516 | MDR-TB | lineage4.3 | in | ERR4800565 | Pre-XDR-TB | lineage3.1.2 | in | ERR4809065 | MDR-TB | lineage4.1.1.3 | za | ERR4020190 | MDR-TB | lineage4.1.1.3 | None | ERR4423717 | MDR-TB | lineage4.1.1.3 | None | ERR4553635 | MDR-TB | lineage2.2 | None | ERR4809200 | MDR-TB | lineage4.1.1.3 | za | ERR4809172 | MDR-TB | lineage4.1.1.3 | za | ERR4809202 | MDR-TB | lineage4.1.1.3 | za | ERR5866574 | MDR-TB | lineage2.2.1 | None | ERR7361992 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR5866573 | MDR-TB | lineage2.2.1 | None | ERR7361958 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR7361983 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR7361990 | Pre-XDR-TB | lineage4.1.1.3 | None |
---|