Rv2752c - c.-148G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
1 Sensitive
2 RR-TB
25 HR-TB
5 MDR-TB
3 Pre-XDR-TB
1 XDR-TB
55 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.1;lineage4.9;lineage6.3 | 2 |
| 20 | |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage4.3.3 | 1 |
| lineage2.1;lineage6.3 | 1 |
| lineage2.1;lineage4.9 | 8 |
| lineage4.1.2.1 | 1 |
| lineage4.1.3 | 2 |
| lineage6.3.1 | 1 |
| La3;lineage4.9 | 2 |
| lineage2.2.1 | 5 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage4.9 | 18 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage2.2.1.2 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage3.1.1 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4.9;lineage6.3 | 3 |
| La3 | 1 |
| lineage2.2.1;lineage3 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage3.1 | 1 |
| La1.7;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage4.1.1.1 | 1 |
| lineage4.8 | 2 |
| lineage4 | 2 |
| lineage4.3.4 | 1 |
| lineage2.1 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 92 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR1175074 | Other | None | ERR4815604 | Other | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR4800341 | Other | None | ERR4810741 | HR-TB | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR29017461 | Other | La3;lineage4.9 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | SRR7535086 | Other | None | ERR4816585 | Other | lineage2.2.1 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR1173400 | Other | lineage4.9 | None | SRR7496472 | Other | lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR9786671 | Other | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | SRR1196583 | Other | lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR7496517 | Other | None | ERR4820773 | HR-TB | lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR26159043 | Other | lineage4.9 | None | SRR29051077 | Other | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR161037 | Other | lineage4.9 | None | ERR4811142 | RR-TB | None | ERR4811075 | Other | None | ERR4811311 | Other | None | SRR1196474 | Other | lineage3.1.1 | None | SRR1196546 | Other | lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR12416824 | HR-TB | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR1172728 | RR-TB | La3 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | ERR4816656 | Other | lineage4.9 | None | SRR29055629 | MDR-TB | lineage2.2.1 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184294 | Other | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | SRR25827682 | Other | None | ERR9786604 | Other | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR29096541 | Other | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR4817735 | Other | lineage4.8 | None | SRR6789626 | Other | None | ERR2027263 | Other | lineage4 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR4816999 | Other | None | ERR4811105 | HR-TB | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR4817893 | Other | lineage4.8 | None | ERR9117721 | HR-TB | None | ERR4816478 | HR-TB | lineage4 | None | SRR20969677 | HR-TB | lineage2.1 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR1184381 | MDR-TB | None | ERR234659 | Other | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | ERR4407463 | HR-TB | None | ERR4819241 | Other | lineage4.9 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR4818929 | HR-TB | lineage4.9 | None |
|---|
