Rv0005 - c.957C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
24 Sensitive
3 RR-TB
23 HR-TB
8 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
59 Other
lineage Counts
| lineage | Count |
|---|---|
| La3;lineage2.1;lineage4.9 | 2 |
| lineage4.9 | 42 |
| La1.7;lineage4.9 | 3 |
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| La1.6;lineage4 | 1 |
| lineage4.9;lineage6.3 | 5 |
| lineage4.1.2.1 | 1 |
| 10 | |
| La3;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 6 |
| lineage2.2.1 | 9 |
| lineage4.3.4.2 | 1 |
| lineage4.1.1.1 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage4.6.2.2 | 2 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| La3 | 2 |
| lineage4.1.2 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.9;lineage7 | 2 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.2 | 1 |
| lineage1.2.1.1 | 1 |
| lineage4.6.1 | 1 |
| lineage2.2.2;lineage4 | 1 |
| lineage2.1 | 1 |
| La1;lineage4.9 | 2 |
| lineage1.1.3.1 | 1 |
| lineage3.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.3.3 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4 | 1 |
| lineage4.8 | 2 |
| lineage1.1.2 | 2 |
| M.canetti;lineage1 | 1 |
| lineage4.9;lineage9 | 1 |
| lineage6.3.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 119 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR28351554 | Sensitive | La1.6;lineage4 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR1196566 | Other | lineage4.9 | None | SRR3675232 | Other | lineage4.1.2.1 | None | ERR4407463 | HR-TB | None | SRR1172951 | Other | lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR1181020 | Other | lineage2.2.1 | None | ERR323107 | Sensitive | lineage4.9 | None | ERR176549 | Other | lineage4.3.4.2 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | SRR7535086 | Other | None | ERR1035122 | Sensitive | lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1172817 | Other | La3 | None | SRR1173400 | Other | lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR29055629 | MDR-TB | lineage2.2.1 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | ERR9786843 | Other | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | SRR1173633 | Other | lineage4.9 | None | SRR1184372 | MDR-TB | None | SRR6045795 | Sensitive | lineage2.2.1 | None | SRR1196583 | Other | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1183049 | RR-TB | lineage2.2 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR13285068 | Sensitive | lineage4.9 | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR15368973 | Other | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | SRR6045219 | HR-TB | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR6358755 | Other | lineage4.6.1 | None | ERR4811311 | Other | None | SRR28119753 | Other | lineage4.9 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR29093909 | Other | lineage4.9 | None | SRR6511621 | Sensitive | lineage4.9 | None | SRR20969677 | HR-TB | lineage2.1 | None | SRR1172728 | RR-TB | La3 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | SRR6046594 | Sensitive | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR28119811 | Other | lineage2.2.1 | None | SRR6044835 | Other | lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | ERR779852 | Sensitive | lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | SRR1184381 | MDR-TB | None | SRR28119805 | Other | lineage4.9 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1196768 | MDR-TB | None | ERR736872 | HR-TB | lineage4.9 | None | ERR387051 | Other | lineage4.9 | None | SRR1175074 | Other | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1169194 | Other | lineage4.9 | None | ERR6866410 | Sensitive | lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR2513470 | Other | lineage4.2.2.2 | None | ERR2446566 | Other | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | SRR5341330 | Other | lineage4.9 | None | ERR4817735 | Other | lineage4.8 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR21733183 | RR-TB | lineage1.1.2 | None | SRR6789626 | Other | None | ERR4810741 | HR-TB | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR502908 | HR-TB | lineage2.2.1 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR1196546 | Other | lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR4817893 | Other | lineage4.8 | None | SRR1165699 | Other | lineage4.9 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR1172234 | Other | lineage4.9 | None |
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