Rv0001 - c.912T>G
Drug resistance types
3 Sensitive
11 RR-TB
47 HR-TB
25 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
103 Other
lineage Counts
| lineage | Count |
|---|---|
| 18 | |
| lineage4.9;lineage6.3 | 6 |
| lineage4.9 | 40 |
| lineage2.2.1 | 12 |
| lineage2.1;lineage6.3 | 2 |
| La3;lineage2.1;lineage4.9 | 3 |
| lineage6.3.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 10 |
| lineage2.1;lineage4.9 | 14 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage3 | 3 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 3 |
| lineage2.1 | 3 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage1;lineage4.9 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.1.2.1 | 4 |
| La1;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.1.1.1 | 2 |
| lineage4.3.2 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage4.1.3 | 2 |
| lineage4.1.2 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| La3 | 2 |
| lineage6.1.3 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La3;lineage4.9 | 5 |
| La1.6;lineage4 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| lineage2.2 | 2 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| La3;lineage4.8 | 2 |
| lineage4.3.4 | 1 |
| lineage1.1.2 | 1 |
| lineage4.2;lineage4.9 | 3 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage4.9;lineage7 | 1 |
| lineage4.9;lineage9 | 1 |
| lineage2.2.1;lineage6.3 | 1 |
| lineage4.4.1.1 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.1;lineage4.8 | 1 |
| lineage4.2.1 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.4.1.2 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.6.2.2 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La1.2 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.2.2 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage4.8 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4 | 1 |
| lineage3.1 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| La3;lineage2 | 1 |
| lineage1.1.3.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 191 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR7496509 | Other | None | SRR3675572 | Other | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR9786604 | Other | None | ERR9786843 | Other | None | ERR9117709 | Other | None | SRR3675236 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR4816999 | Other | None | ERR779852 | HR-TB | lineage4.9 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | ERR212033 | Other | lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR18003019 | Other | lineage2.2.1 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR990545 | RR-TB | lineage3 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR181887 | Other | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR23961558 | RR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | SRR7496472 | Other | lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR502524 | MDR-TB | lineage4.9;lineage6.3 | None | SRR3675571 | MDR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR176779 | HR-TB | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | SRR1165699 | Other | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR473332 | Other | lineage4.9 | None | ERR4818347 | Other | lineage4.1.2 | None | SRR1196546 | Other | lineage4.9 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR294266 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR1172817 | Other | La3 | None | ERR9787165 | Other | lineage6.1.3 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | SRR1183144 | RR-TB | lineage2.2.1 | None | ERR736863 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR2026697 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR9786671 | Other | None | SRR1175074 | Other | None | ERR4815604 | Other | None | ERR11252612 | Other | La3;lineage4.9 | None | SRR18213713 | HR-TB | None | ERR987722 | MDR-TB | None | SRR28351554 | Other | La1.6;lineage4 | None | ERR9787197 | Other | None | SRR1196768 | MDR-TB | None | ERR4817060 | Other | None | SRR28119777 | Other | lineage4.9 | None | SRR1196583 | Other | lineage4.9 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR3675275 | Other | lineage4.9 | None | ERR4800341 | HR-TB | lineage3 | None | ERR176651 | Other | lineage4.9 | None | ERR4810624 | MDR-TB | lineage2.2 | None | SRR3675555 | MDR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR4817893 | Other | La3;lineage4.8 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | SRR6046295 | MDR-TB | lineage4.2;lineage4.9 | None | ERR2693252 | HR-TB | lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | ERR2026698 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR323115 | Sensitive | lineage4.9 | None | SRR1184312 | Other | lineage2.2.1 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR176643 | Other | La3;lineage4.9 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR6789621 | Other | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR9786525 | RR-TB | lineage4.1;lineage4.8 | None | ERR3797070 | Other | lineage4.9 | None | SRR3675221 | Other | lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1196566 | Other | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR1172728 | RR-TB | La3 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR12015083 | Other | La3;lineage4.8 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1180172 | RR-TB | lineage2.2.1 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR6789626 | Other | None | ERR234659 | HR-TB | None | SRR7535086 | Other | None | SRR6045795 | Other | lineage2.2.1 | None | ERR6358979 | HR-TB | lineage4.9 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR23961549 | Other | La1.2 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | SRR18910194 | HR-TB | lineage2.2.2 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR1196677 | Other | lineage2.2 | None | ERR9786569 | Other | lineage4.8 | None | ERR702406 | Other | lineage2.1 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR5341333 | HR-TB | lineage2.1;lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR6046066 | Other | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | SRR16156817 | Other | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1173400 | Other | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR1181289 | RR-TB | lineage2.2.1 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR4828872 | RR-TB | lineage4.2;lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR181824 | MDR-TB | lineage4.9 | None | ERR8479578 | HR-TB | lineage1.1.3.1 | None |
|---|
