Rv3794 - c.2553G>C


Drug resistance types
0 Sensitive 3 RR-TB 39 HR-TB 11 MDR-TB 3 Pre-XDR-TB 3 XDR-TB 76 Other
lineage Counts
lineage Count
La1.6;La3;M.canetti;lineage2.1;lineage4.9 1
lineage5.2 2
lineage4.9;lineage6.3 6
lineage4.9 25
lineage4.1.1.1 2
lineage2.1;lineage4.9 13
lineage1.2.1.2 1
La3 2
M.canetti;lineage2.1;lineage4.9 2
lineage2.2.1 2
La3;lineage2 1
La3;lineage2.1;lineage4.9 3
M.canetti;lineage2.1;lineage6.3 1
lineage4.1.1.3 2
lineage2.1;lineage4.9;lineage6.3 7
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
17
La1.7;M.canetti;lineage4.9 1
lineage3 1
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La1.7.X-unk4;lineage4.9 1
La3;lineage4.9 2
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 4
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 1
lineage2.1 3
lineage2.2.1;lineage3 1
La3;lineage2.1;lineage4.9;lineage6.3 4
lineage4.3.3 1
M.canetti;lineage4.9 1
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
lineage4.2;lineage4.8.1;lineage4.9 1
La1.7;lineage4.2 1
M.canetti;lineage4.9;lineage9 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage4.6.1.1 1
lineage2.2.1;lineage6.3 1
M.canetti;lineage4.2;lineage4.9 1
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 1
lineage4 3
La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 1
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
M.canetti;lineage2.2 2
La3;lineage2.1;lineage6.3 1
lineage2.1;lineage6.3 2
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La3;M.canetti;lineage2.2.1 1
La1.6;La3;lineage4.6.4;lineage4.9 1
La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 1
spoligotype Counts
spoligotype Count
None 135
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR3283020 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.9 None
ERR4872094 MDR-TB lineage5.2 None
ERR502524 MDR-TB lineage4.9;lineage6.3 None
ERR4815441 HR-TB lineage4.9 None
ERR176793 Other lineage4.1.1.1 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
SRR6046540 Other lineage2.1;lineage4.9 None
SRR12006550 Other lineage1.2.1.2 None
ERR4819877 HR-TB lineage4.9 None
ERR176751 HR-TB lineage4.9 None
SRR1172728 RR-TB La3 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR4819781 Other lineage2.2.1 None
ERR9119500 MDR-TB lineage5.2 None
SRR1172234 Other lineage4.9 None
SRR6044790 Other lineage2.1;lineage4.9 None
SRR20969677 HR-TB La3;lineage2 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
ERR11465024 Other lineage4.1.1.3 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
ERR736863 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR25827507 MDR-TB lineage4.1.1.1 None
SRR3675572 Other None
SRR28119805 Other lineage4.9 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
ERR4800341 HR-TB lineage3 None
ERR5311091 Other La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR176568 HR-TB La3;lineage2.1;lineage4.9 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
SRR3675520 Other La1.7.X-unk4;lineage4.9 None
SRR26399973 Other La3;lineage4.9 None
ERR2693245 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
ERR3283024 HR-TB La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 None
SRR12142341 HR-TB lineage2.1 None
SRR25827497 XDR-TB lineage2.2.1;lineage3 None
SRR3675216 Other lineage2.1;lineage4.9 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR1184298 Pre-XDR-TB lineage4.3.3 None
ERR4817731 HR-TB lineage4.9 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
ERR4814352 Other lineage2.2.1 None
ERR3283042 HR-TB lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
SRR3675457 Other lineage4.9 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR4797054 Pre-XDR-TB lineage2.1 None
SRR1196546 Other lineage4.9 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
SRR23961559 Other La1.7;lineage4.2 None
ERR3283018 HR-TB lineage4.9 None
ERR4819241 Other lineage4.9 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
ERR9786671 Other None
SRR1175074 Other None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR9786604 Other None
ERR4815604 Other None
ERR9117709 Other None
ERR234659 HR-TB None
ERR11252599 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 None
SRR25827682 Other None
SRR3675236 Other None
SRR1196583 Other lineage4.9 None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR3797044 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675581 Other lineage2.1;lineage4.9 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR11465025 Other lineage4.1.1.3 None
ERR3797017 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR1169194 Other lineage4.9 None
SRR6045242 Other lineage2.1;lineage4.9 None
SRR6046482 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR6358755 Other lineage4.6.1.1 None
ERR3283019 Other lineage2.1;lineage4.9 None
ERR176643 Other La3;lineage4.9 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
SRR1173400 Other lineage4.9 None
ERR3283032 Other lineage4.9 None
SRR3675571 MDR-TB M.canetti;lineage4.2;lineage4.9 None
ERR3797070 Other lineage4.9 None
ERR2693230 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR1184294 Other lineage4.9 None
ERR1034652 Other La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 None
ERR4816478 HR-TB lineage4 None
ERR4816656 Other lineage4.9 None
ERR2693257 HR-TB La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR1172817 Other La3 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
ERR4819422 HR-TB lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
SRR28119756 Other lineage4.9;lineage6.3 None
SRR1184381 MDR-TB None
ERR4553845 RR-TB None
ERR9786843 Other None
SRR1184372 MDR-TB None
SRR7535086 Other None
SRR18213713 HR-TB None
ERR4816999 Other None
SRR1196768 MDR-TB None
SRR28119777 Other lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
ERR5336148 Other lineage2.1;lineage6.3 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR1184380 Other lineage2.1;lineage4.9 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR4818929 HR-TB lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR4816466 HR-TB lineage4.9 None
ERR702406 Other lineage2.1 None
SRR3675214 Other lineage4.9 None
ERR3283044 Other lineage4 None
ERR2693231 HR-TB La1.6;La3;lineage4.6.4;lineage4.9 None
SRR3675465 Other lineage4.9;lineage6.3 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR5341333 HR-TB lineage2.1;lineage4.9 None
SRR1173778 Other lineage4.9 None
SRR3675234 HR-TB La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR2027263 Other lineage4 None
ERR3797014 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR26159043 Other lineage4.9 None
ERR323043 Other lineage2.1;lineage4.9 None