Rv3596c - c.2412G>C


Drug resistance types
10 Sensitive 14 RR-TB 94 HR-TB 45 MDR-TB 3 Pre-XDR-TB 2 XDR-TB 134 Other
lineage Counts
lineage Count
lineage4.9;lineage6.3 6
M.canetti;lineage2.1;lineage4.9;lineage6.3 6
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 2
M.canetti;lineage2.1;lineage4.9 26
La1.7;M.canetti;lineage4.9 3
lineage4.9 57
lineage4.9;lineage6.1.3 1
lineage2.1;lineage4.9;lineage6.3 6
La1.2.BCG;La1.8.1 1
27
La3;M.canetti;lineage4.9 2
La3;M.canetti;lineage2.1;lineage4.9 12
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 2
lineage2.1;lineage4.9 19
La3;lineage2.1;lineage4.9 2
La3;M.canetti;lineage2.1;lineage3.1 1
lineage2.1;lineage6.3 2
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
La1.7;lineage4.9 7
lineage4.1.2.1 10
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 4
lineage4.1.1.1 3
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 4
lineage1;lineage4.9 1
lineage4 1
lineage4.3.2 1
lineage2.2.1 15
M.canetti;lineage4.3.1;lineage4.9 1
lineage4.6.1 1
lineage2.1;lineage4.3.2;lineage4.9 1
lineage4.7 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9 2
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
lineage2.2 2
M.canetti;lineage2.1;lineage4.1.2.1 1
La3 2
lineage2.2.1;lineage3 1
lineage4.4.1.1 3
lineage2.1 2
lineage4.1.1;lineage4.9 1
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
M.canetti;lineage2.1;lineage6.3 2
La3;M.canetti;lineage3.1 1
M.canetti;lineage2.1 1
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 1
lineage3.1;lineage9 1
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
M.canetti;lineage2.1;lineage4 1
La3;M.canetti;lineage2.2.1 1
La1.7;lineage4.9;lineage7 2
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
lineage4.6.3;lineage4.9;lineage6.3 1
La1.7 1
M.canetti;lineage2.2 1
M.canetti;lineage4.9 4
lineage1.1 1
lineage3 3
lineage4.1.1.3 1
lineage4.1.2.1.1 1
lineage3.1.1 1
lineage4.1.3 2
lineage6.3.1 1
La3;lineage4.9 2
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
lineage4.1.2 2
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 1
La1.7;lineage3;lineage4.9;lineage7 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9 1
M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 1
La1.6;lineage4 1
La3;M.canetti;lineage4.8;lineage4.9 1
La3;lineage2.1;lineage4.9;lineage6.3 2
lineage4.3.4 1
lineage2.2.1.2 1
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
lineage4.4.1.2 1
lineage4.3.4.2.1 1
La1.8.1 1
lineage3.1.2.2 1
La1.7.1;lineage4.9 1
lineage2.1;lineage4.9;lineage6.3;lineage8 1
lineage4.8 1
lineage1.1.2;lineage4 1
La1.7.1 1
lineage4.3.3 1
lineage4.9;lineage7 1
M.canetti;lineage2.1;lineage3 1
M.canetti;lineage4.1.1.3;lineage6.3;lineage8 1
spoligotype Counts
spoligotype Count
None 302
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR13265528 Other lineage4.9;lineage6.3 None
ERR5311098 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR6358837 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR3797016 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675505 Other La1.7;M.canetti;lineage4.9 None
SRR3675465 Other lineage4.9;lineage6.3 None
ERR1063858 HR-TB lineage4.9 None
ERR3445504 Other lineage4.9;lineage6.1.3 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1173778 Other lineage4.9 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
SRR1196768 MDR-TB None
SRR1196583 Other lineage4.9 None
ERR2693229 RR-TB La3;M.canetti;lineage4.9 None
ERR323063 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR18213713 HR-TB None
SRR6046460 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
SRR1175074 Other None
ERR294248 MDR-TB lineage2.1;lineage4.9 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR323036 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR323108 HR-TB La1.7;lineage4.9 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1166821 Other lineage4.1.2.1 None
ERR126608 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR323040 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
SRR14782054 Other lineage4.9 None
ERR176793 Other lineage4.1.1.1 None
ERR181887 Other lineage4.9 None
SRR3675486 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR323045 HR-TB lineage1;lineage4.9 None
ERR2027263 Other lineage4 None
ERR4800341 Other None
SRR3675461 RR-TB lineage4.9 None
SRR29050859 Other lineage4.9 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR772255 MDR-TB lineage4.3.2 None
ERR502908 HR-TB lineage2.2.1 None
ERR9119138 RR-TB M.canetti;lineage4.3.1;lineage4.9 None
ERR6358755 Other lineage4.6.1 None
SRR1196546 Other lineage4.9 None
SRR29231479 RR-TB lineage4.9 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
ERR4820854 Other lineage4.1.2.1 None
ERR4819932 Sensitive lineage4.7 None
ERR5311082 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
SRR6046644 HR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
ERR8976043 HR-TB lineage2.2 None
SRR12142341 HR-TB lineage2.2.1 None
ERR1023295 MDR-TB M.canetti;lineage2.1;lineage4.1.2.1 None
ERR278594 HR-TB lineage2.1;lineage4.9 None
ERR2229143 RR-TB lineage4.9 None
SRR12006550 Sensitive None
SRR12416824 HR-TB None
ERR176779 HR-TB lineage4.9 None
SRR1165699 Other lineage4.9 None
SRR6045290 RR-TB M.canetti;lineage2.1;lineage4.9 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6045948 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR20969708 HR-TB lineage2.2.1 None
SRR1172728 RR-TB La3 None
SRR25827497 XDR-TB lineage2.2.1;lineage3 None
SRR3675518 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR28119777 Other lineage4.9 None
SRR1173767 MDR-TB lineage4.4.1.1 None
ERR4816559 MDR-TB lineage4.4.1.1 None
ERR4816585 Other lineage2.2.1 None
ERR702406 Other lineage2.1 None
ERR5311099 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR1063849 HR-TB lineage4.9 None
SRR6325442 HR-TB lineage4.1.1;lineage4.9 None
ERR9117709 Other None
SRR29055629 MDR-TB lineage2.2.1 None
ERR323055 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR28119811 Other lineage2.2.1 None
SRR7496509 Other None
ERR736867 Other lineage2.1;lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
ERR5311094 HR-TB lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
SAMN02414850 Other lineage4.1.2.1 None
ERR4799513 HR-TB lineage2.2 None
SRR29016780 Other lineage4.9 None
ERR212125 HR-TB lineage4.9 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
ERR323041 HR-TB M.canetti;lineage2.1 None
ERR323038 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR3675554 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR9787197 Other None
ERR6359045 Other M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 None
ERR4814352 Other lineage2.2.1 None
ERR124652 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR323047 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4819781 Other lineage2.2.1 None
SRR1184372 MDR-TB None
ERR323060 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6045242 Other lineage2.1;lineage4.9 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR4407463 HR-TB None
SRR6045952 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR1172951 Other lineage4.9 None
SRR25827418 XDR-TB lineage3.1;lineage9 None
ERR4188342 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3283040 HR-TB lineage4.9 None
SRR3675508 Other lineage2.1;lineage4.9;lineage6.3 None
ERR3468607 Other lineage4.9 None
ERR2026698 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR323058 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR2693242 RR-TB lineage2.1;lineage4.9 None
ERR3283019 Other lineage2.1;lineage4.9 None
ERR2693239 RR-TB M.canetti;lineage2.1;lineage4 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
SRR1184388 Other lineage2.1;lineage4.9 None
SRR3675506 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311083 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR5341313 Sensitive La1.7;lineage4.9;lineage7 None
ERR5311081 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5162090 RR-TB lineage4.9 None
SRR3675501 Other La1.7;lineage4.9 None
ERR3797083 RR-TB lineage4.9 None
SRR1169194 Other lineage4.9 None
SRR5341432 Sensitive La1.7;lineage4.9;lineage7 None
SRR6046362 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
SRR6325445 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR3675269 RR-TB lineage4.9 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
ERR4830353 Other La1.7 None
SRR3675267 Other La1.7;lineage4.9 None
SRR6045526 Other lineage4.9 None
ERR1873396 Pre-XDR-TB M.canetti;lineage2.2 None
ERR736839 HR-TB M.canetti;lineage4.9 None
ERR3077978 Other lineage1.1 None
ERR3797015 HR-TB lineage4.9 None
SRR5341330 Other lineage4.9 None
SRR6789626 Other None
ERR5311078 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR26159043 Other lineage4.9 None
ERR400529 Other lineage3 None
ERR4816551 HR-TB lineage4.1.1.3 None
ERR4821053 Other lineage3 None
ERR4810624 HR-TB lineage2.2.1 None
ERR216938 HR-TB La1.7;lineage4.9 None
ERR5917710 Other lineage4.1.2.1 None
ERR760733 MDR-TB lineage4.1.2.1.1 None
ERR3283016 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1196474 Other lineage3.1.1 None
SRR1184380 Other lineage2.1;lineage4.9 None
ERR4817896 HR-TB lineage2.2.1 None
ERR9786611 HR-TB lineage4.1.3 None
ERR1063862 HR-TB lineage4.9 None
ERR9787139 Other lineage6.3.1 None
SRR3675236 Other None
SRR29017461 Other La3;lineage4.9 None
SRR3675515 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311089 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
ERR13265748 Other lineage4.9;lineage6.3 None
SRR13861224 Sensitive lineage4.9 None
ERR4188350 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6325447 HR-TB lineage4.1.1.1 None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
ERR176766 HR-TB lineage2.1;lineage4.9 None
SRR3675441 Other lineage4.9 None
SRR5709967 MDR-TB lineage2.2.1 None
SRR9970978 Sensitive lineage4.1.2 None
SRR3675581 Other lineage2.1;lineage4.9 None
SRR3675450 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR1172234 Other lineage4.9 None
SRR6045519 MDR-TB M.canetti;lineage4.9 None
SRR3675488 Other La1.7;lineage4.9 None
ERR3283017 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 None
SRR28119752 Other lineage4.9 None
SRR5341315 Other La1.7;lineage3;lineage4.9;lineage7 None
SRR3675320 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9 None
ERR5311090 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR7131023 Other lineage4.1.2.1 None
ERR3797070 Other lineage4.9 None
SRR1165584 Other lineage4.1.2.1 None
ERR4811493 HR-TB lineage4.9 None
SRR6046196 Other La1.7;M.canetti;lineage4.9 None
SRR6325448 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR473314 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR126600 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR176778 HR-TB lineage4.9 None
SRR3675487 Other M.canetti;lineage4.9 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
SRR1173453 Other lineage4.4.1.1 None
SRR1640750 Other None
SRR3675545 Other La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675568 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 None
SRR5341333 Other lineage2.1;lineage4.9 None
SRR28351554 Sensitive La1.6;lineage4 None
SRR3675444 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR038268 HR-TB La3;M.canetti;lineage4.8;lineage4.9 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR176651 Other lineage4.9 None
ERR176658 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6046540 Other lineage2.1;lineage4.9 None
SRR3675322 HR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
ERR1035239 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR5341373 Other lineage4.9 None
SRR3675385 Other La1.7;lineage4.9 None
SRR3675507 Other lineage4.9 None
ERR736817 HR-TB lineage4.3.4 None
ERR4797054 Pre-XDR-TB lineage2.2.1.2 None
SRR6046514 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4815604 Other None
SRR3675214 Other lineage4.9 None
SRR26399973 Other La3;lineage4.9 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
ERR5311100 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311101 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR2026697 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR1163221 MDR-TB lineage4.1.2.1 None
SRR6044790 Other lineage2.1;lineage4.9 None
SRR1167055 Other lineage4.1.2.1 None
SRR14801759 HR-TB La1.7;lineage4.9 None
SRR1184312 Other lineage2.2.1 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR323056 HR-TB lineage4.4.1.2 None
ERR323044 HR-TB lineage4.3.4.2.1 None
ERR3468544 Other lineage2.1;lineage4.9 None
ERR3797023 HR-TB La1.8.1 None
SRR29051077 Other lineage4.9 None
ERR4819051 Sensitive lineage4.9 None
ERR4811105 HR-TB None
ERR161033 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4818347 Other lineage4.1.2 None
ERR3804169 HR-TB lineage4.1.3 None
ERR4798648 MDR-TB lineage3.1.2.2 None
ERR502912 Other lineage2.2.1 None
ERR4810741 HR-TB None
ERR4811075 Other None
ERR4811142 RR-TB None
ERR4811311 Other None
SRR28119753 Other lineage4.9 None
SRR3675481 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR29093909 Other lineage4.9 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
SRR29051093 Other lineage4.9 None
SRR3675524 Other lineage4.9;lineage6.3 None
SRR3675561 Other M.canetti;lineage2.1;lineage4.9 None
SRR13861332 Other lineage4.9 None
SRR7535086 Other None
SRR3675464 HR-TB lineage2.1;lineage4.9;lineage6.3;lineage8 None
ERR4817893 Other lineage4.8 None
ERR9117721 HR-TB None
SRR20969677 HR-TB lineage2.1 None
ERR4816466 HR-TB lineage4.9 None
SRR12416842 HR-TB lineage4.9 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR20969731 Other lineage2.2.1 None
ERR4817692 HR-TB lineage1.1.2;lineage4 None
SRR6458423 HR-TB lineage2.2.1 None
SRR14782405 HR-TB lineage4.9 None
SRR3675449 Other M.canetti;lineage4.9 None
SRR7240492 HR-TB La1.7.1 None
ERR5336148 Other lineage2.1;lineage6.3 None
SRR1172817 Other La3 None
SRR1173400 Other lineage4.9 None
SRR25827507 MDR-TB lineage4.1.1.1 None
SRR6831950 Sensitive lineage4.3.3 None
ERR4831117 HR-TB lineage4.9;lineage7 None
SRR1165423 RR-TB lineage4.1.2.1 None
ERR323043 Other lineage2.1;lineage4.9 None
ERR5311102 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311096 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR29603691 Sensitive lineage3 None
SRR1184294 Other lineage4.9 None
ERR1873393 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR386953 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4814536 MDR-TB M.canetti;lineage2.1;lineage3 None
SRR29097037 Other lineage4.9 None
SRR5341456 Other lineage4.9 None
ERR2514692 Other None
SRR25827682 Other None
SRR28119805 Other lineage4.9 None
SRR6789621 Other lineage4.9 None
ERR4817060 Other None
SRR1162864 Other lineage4.1.2.1 None
SRR6044815 Other lineage4.9 None
SRR28119756 Other lineage4.9;lineage6.3 None
ERR9786604 Other None
SRR3675243 Other lineage4.9 None
SRR3675558 HR-TB M.canetti;lineage4.1.1.3;lineage6.3;lineage8 None
SRR3675572 Other None
SRR6045380 Other lineage2.1;lineage4.9 None