Rv1484 - c.-256C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
11 Sensitive
2 RR-TB
28 HR-TB
11 MDR-TB
8 Pre-XDR-TB
3 XDR-TB
49 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.7;M.canetti;lineage4.9 | 3 |
| lineage4.9 | 29 |
| lineage3.1.2.2 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage2.1;lineage4.9 | 6 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| La3;lineage4.9 | 2 |
| La3 | 2 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| La1.7;lineage4.2 | 1 |
| lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.9 | 5 |
| 9 | |
| lineage4.3.2;lineage4.9 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| lineage4.9;lineage7 | 2 |
| La2;lineage4.9 | 2 |
| lineage2.2.1 | 3 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage4.8 | 1 |
| lineage2.1 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.2.1 | 6 |
| lineage2.2.1;lineage4.1.2.1 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.3.4 | 1 |
| lineage4.1.2.1 | 1 |
| lineage4.3.3 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.1.1.1 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| La1;lineage4.9 | 1 |
| La1.7;lineage4.9 | 3 |
| La1.7.1;lineage4.9 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.1.2 | 1 |
| lineage3.1 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| M.canetti;lineage2.2 | 2 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage4.2;lineage4.9 | 1 |
| lineage3.1;lineage9 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La2;lineage2.2 | 1 |
| lineage4.3.4.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 112 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | SRR1196546 | Other | lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR1165699 | Other | lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | SRR1172817 | Other | La3 | None | SRR1173400 | Other | lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR779852 | Sensitive | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | ERR9787197 | Other | None | SRR10808730 | Other | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR1184372 | MDR-TB | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR1196583 | Other | lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1169194 | Other | lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR29231479 | RR-TB | lineage4.9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR4817893 | Other | lineage4.8 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR702406 | Other | lineage2.1 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR3675441 | Other | lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | ERR11067162 | Pre-XDR-TB | lineage4.2.1 | None | ERR11488822 | Pre-XDR-TB | lineage2.2.1;lineage4.1.2.1 | None | ERR11044849 | Pre-XDR-TB | lineage4.2.1 | None | SRR1184294 | Other | lineage4.9 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | SRR1172951 | Other | lineage4.9 | None | SRR1196768 | MDR-TB | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR1175074 | Other | None | ERR11465597 | Sensitive | lineage4.1.2.1 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR11798668 | Pre-XDR-TB | lineage4.2.1 | None | SRR29050859 | Other | lineage4.9 | None | SRR10380017 | HR-TB | lineage4.2.1 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | SRR1172728 | RR-TB | La3 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR1172234 | Other | lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR9786843 | Other | None | SRR1184381 | MDR-TB | None | ERR987722 | MDR-TB | None | SRR1172857 | Other | None | SRR6789621 | Other | lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR14782458 | Pre-XDR-TB | lineage4.2.1 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR1173363 | Other | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | ERR387051 | Other | lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | SRR14782680 | Pre-XDR-TB | lineage4.2.1 | None | SRR6045526 | Other | lineage4.9 | None | ERR176549 | Other | lineage4.3.4.2 | None | ERR181887 | Other | lineage4.9 | None | SRR1173384 | Other | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None |
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