Rv0001 - c.792C>T
Drug resistance types
3 Sensitive
3 RR-TB
20 HR-TB
13 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
28 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9;lineage9 | 2 |
| La3;lineage4.9 | 13 |
| 5 | |
| lineage4.9 | 12 |
| La3;lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9 | 2 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| lineage2.2.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 3 |
| lineage3.1.2.2 | 1 |
| lineage4.9;lineage6.3 | 2 |
| lineage4.1.2.1 | 1 |
| La3;lineage4 | 1 |
| lineage4.3.4.2.1 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 2 |
| La1.7.1 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| lineage3.1.2.1;lineage3.1.2.2 | 1 |
| La1.6;La3;lineage4.9 | 1 |
| lineage3.1 | 1 |
| lineage3.1.1 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage4.9;lineage7 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| La2;lineage4.9 | 1 |
| La3 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage2.2 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage3 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 68 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR11252612 | Other | La3;lineage4.9 | None | SRR1184372 | MDR-TB | None | SRR1196583 | Other | lineage4.9 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR176643 | Other | La3;lineage4.9 | None | SRR1173400 | Other | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | SRR23961558 | RR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR3797063 | Other | La3;lineage4.9 | None | ERR502524 | MDR-TB | lineage4.9;lineage6.3 | None | SRR6046210 | Other | lineage4.9 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR1172951 | Other | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | ERR176751 | HR-TB | lineage4.9 | None | ERR11049883 | Sensitive | lineage4.1.2.1 | None | ERR3283028 | Other | La3;lineage4 | None | SRR1173363 | Other | None | ERR161034 | HR-TB | lineage4.3.4.2.1 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR1172310 | MDR-TB | lineage4.9 | None | ERR2693231 | HR-TB | La1.6;La3;lineage4.6.4;lineage4.9 | None | ERR987729 | MDR-TB | lineage3.1.2.1;lineage3.1.2.2 | None | SRR1169306 | Other | La3;lineage4.9 | None | ERR2693254 | Other | La1.6;La3;lineage4.9 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR1184346 | HR-TB | lineage3.1 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR1196474 | Other | lineage3.1.1 | None | ERR736865 | MDR-TB | lineage4.3.2;lineage4.9 | None | ERR3445502 | HR-TB | lineage4.9;lineage7 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR323039 | MDR-TB | La2;lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR1172728 | RR-TB | La3 | None | ERR3283014 | Other | La3;lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR1165628 | Other | La3;lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR1196546 | Other | lineage4.9 | None | SRR1184381 | MDR-TB | None | ERR212001 | HR-TB | None | SRR1172857 | Other | None | ERR4810624 | MDR-TB | lineage2.2 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR212033 | Other | lineage4.9 | None | ERR4798504 | RR-TB | lineage3 | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR1167384 | Other | La3;lineage4.9 | None | ERR3283031 | Other | La3;lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR3283024 | HR-TB | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | ERR3797014 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None |
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