Rv0676c - c.2538C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
12 Sensitive
2 RR-TB
43 HR-TB
5 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
53 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 42 |
| lineage2.1;lineage4.9;lineage6.3 | 5 |
| lineage2.2.1 | 6 |
| 13 | |
| lineage4.9;lineage6.3 | 10 |
| lineage2.1;lineage4.9 | 3 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage4.2;lineage4.9 | 1 |
| La2;lineage2.2 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| La1.7;lineage4.9 | 5 |
| La1.7 | 1 |
| lineage4.8 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage2.1 | 2 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La2;lineage4.9 | 2 |
| lineage4.9;lineage9 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage3.1.2.2 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage4.6.3;lineage4.9 | 2 |
| lineage4.3.2;lineage4.9 | 1 |
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage2.2.1.2 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La3;lineage4.9 | 1 |
| lineage1.1.3.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 116 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR1034634 | HR-TB | lineage4.9 | None | SRR28119752 | Other | lineage4.9 | None | SRR29097054 | Sensitive | lineage4.9 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR25827682 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR234659 | Other | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR2693252 | Sensitive | lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR4830353 | Other | La1.7 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR11049020 | Other | lineage4.8 | None | ERR4811075 | Other | None | SRR1196546 | Other | lineage4.9 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR11465509 | Sensitive | lineage4.3.4.2.1 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | SRR20970016 | Other | lineage2.2.1 | None | SRR20969677 | HR-TB | lineage2.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR702406 | Other | lineage2.1 | None | SRR6046594 | Sensitive | lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR29096246 | Sensitive | La1.7;lineage4.9 | None | ERR11465511 | Other | lineage4.3.4.2.1 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | SRR3675221 | Other | lineage4.9 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR29096410 | Other | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR18213713 | HR-TB | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR4800341 | Other | None | SRR29097058 | Other | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR6358991 | HR-TB | None | ERR4811142 | RR-TB | None | ERR4811311 | Other | None | SRR28119753 | Other | lineage4.9 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR3675236 | Other | None | SRR12416824 | HR-TB | None | ERR3283021 | HR-TB | lineage4.9 | None | SRR29096659 | Sensitive | lineage4.9 | None | SRR1165699 | Other | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR28119811 | Other | lineage2.2.1 | None | ERR176751 | Other | lineage4.9 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR6046485 | Other | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR3675558 | HR-TB | M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | None | ERR6866807 | Other | lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR6866410 | Sensitive | lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | SRR29096879 | Sensitive | lineage4.9 | None | ERR4811105 | HR-TB | None | ERR4810741 | HR-TB | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | SRR6044876 | Sensitive | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9117709 | Other | None |
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