Rv3696c - c.1074C>G
Drug resistance types
19 Sensitive
3 RR-TB
35 HR-TB
11 MDR-TB
0 Pre-XDR-TB
1 XDR-TB
52 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.6;La3;lineage4.9 | 2 |
| La1.7;lineage4.9 | 3 |
| lineage4.9 | 49 |
| La3;lineage4.9 | 8 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage6.1.1 | 2 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage4 | 2 |
| lineage2.2.1 | 4 |
| lineage2.2.1.2 | 2 |
| lineage4.9;lineage7 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| La1.6;lineage4 | 1 |
| lineage4.9;lineage6.3 | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.6.2.2 | 2 |
| lineage4.1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| La3;lineage4 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| La2;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.4.1.2 | 1 |
| 2 | |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
| lineage3 | 2 |
| lineage5.2 | 2 |
| La2;lineage4.9;lineage9 | 1 |
| M.canetti;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage3.1;lineage9 | 1 |
| lineage2.2 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| La1.7 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.9;lineage9 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage1.1.3.2 | 1 |
| La1.8.1 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 121 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR3797061 | Other | La1.6;La3;lineage4.9 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4769450 | Other | lineage4.9 | None | SRR3675248 | Other | lineage4.9 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR29097023 | Sensitive | lineage4.9 | None | SRR29096107 | Sensitive | lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | SRR20970016 | Other | lineage2.2.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | ERR4816656 | Other | lineage4.9 | None | SRR3675441 | Other | lineage4.9 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR29097037 | Other | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR10808730 | Other | lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | SRR28351554 | Sensitive | La1.6;lineage4 | None | SRR6045217 | Sensitive | lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4819241 | Other | lineage4.9 | None | SRR29055611 | Sensitive | lineage4.9 | None | ERR11082350 | MDR-TB | lineage4.6.2.2 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | SRR1175127 | Other | lineage2.2.1.2 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR13278785 | MDR-TB | lineage4.6.2.2 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR6045526 | Other | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR6046593 | Other | lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR6358991 | HR-TB | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4798504 | RR-TB | lineage3 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4815441 | HR-TB | lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR29097026 | Other | lineage4.9 | None | ERR3797086 | Sensitive | lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR987722 | MDR-TB | None | ERR4819422 | HR-TB | lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR1183049 | RR-TB | lineage2.2 | None | SRR5535933 | Other | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR9119669 | HR-TB | lineage4.9 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR6045053 | Other | lineage4 | None | SRR6046046 | Other | lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR4830353 | Other | La1.7 | None | SRR29097004 | Other | lineage3 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR29096425 | Sensitive | lineage4.9 | None | ERR2693254 | Other | La1.6;La3;lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | SRR26399490 | Sensitive | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | SRR29231479 | RR-TB | lineage4.9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR3283032 | Other | lineage4.9 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR4819877 | HR-TB | lineage4.9 | None | SRR28868888 | Other | lineage1.1.3.2 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR3283010 | Sensitive | La1.8.1 | None | SRR29096150 | Other | lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | SRR29096203 | Sensitive | lineage4.9 | None | SRR29096410 | Other | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR2693257 | Other | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None |
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