Rv0001 - c.1203T>C


Drug resistance types
0 Sensitive 9 RR-TB 29 HR-TB 20 MDR-TB 0 Pre-XDR-TB 2 XDR-TB 16 Other
lineage Counts
lineage Count
lineage4.9 14
lineage2.1;lineage4.9;lineage6.3 1
La1.6;La3;M.canetti;lineage2.1;lineage4.9 1
lineage4.9;lineage6.3 2
La2;lineage4.9 2
La1.7;lineage4.9 2
M.canetti;lineage4.9 2
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
lineage2.2.1 4
2
M.canetti;lineage2.2 2
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 1
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 4
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 2
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 1
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 1
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
M.canetti;lineage2.2.2;lineage6.2 2
lineage4.6.2.2 2
M.canetti;lineage1 1
lineage2.1;lineage4.1.4;lineage4.9 1
M.canetti;lineage4.2;lineage4.9 1
lineage4.3.2;lineage4.9 1
La1.7;M.canetti;lineage4.9 2
La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 1
lineage2.2.1.1 2
M.canetti;lineage4.9;lineage9 1
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La1.6;La3;lineage4.6.4;lineage4.9 1
lineage3.1.2.1;lineage3.1.2.2 1
La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage3.1.2.2 1
lineage4.9;lineage9 2
La2;lineage4.9;lineage9 1
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 1
lineage4.2;lineage4.9 1
lineage2.1;lineage4.9 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 1
La3;lineage2.1;lineage4.9 1
La1.6;La3;lineage4.9 2
spoligotype Counts
spoligotype Count
None 76
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR6045219 HR-TB lineage4.9 None
SRR23961558 RR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR3283020 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.9 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
ERR323039 MDR-TB La2;lineage4.9 None
ERR323108 HR-TB La1.7;lineage4.9 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
SRR1180172 RR-TB lineage2.2.1 None
SRR1183144 RR-TB lineage2.2.1 None
SRR6046594 Other lineage4.9 None
SRR11662690 HR-TB lineage4.9 None
ERR9786843 Other None
ERR987722 MDR-TB None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
ERR3797044 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
ERR3797017 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR6046362 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR6359045 Other M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 None
ERR3283024 HR-TB La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 None
SRR6045555 Other lineage4.9 None
ERR2026698 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR4769521 RR-TB lineage4.9 None
ERR3797014 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR9119525 MDR-TB lineage4.6.2.2 None
SRR6045399 Other M.canetti;lineage4.9 None
SRR15014655 Other M.canetti;lineage1 None
ERR3797036 HR-TB lineage2.1;lineage4.1.4;lineage4.9 None
SRR3675571 MDR-TB M.canetti;lineage4.2;lineage4.9 None
ERR4872119 MDR-TB lineage4.6.2.2 None
ERR736865 MDR-TB lineage4.3.2;lineage4.9 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
ERR2693230 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR2693257 HR-TB La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 None
SRR1180147 RR-TB lineage2.2.1.1 None
SRR1180137 RR-TB lineage2.2.1 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR3283018 HR-TB lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
ERR2026697 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
ERR5311091 Other La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR13423649 Other lineage2.2.1 None
ERR4816466 HR-TB lineage4.9 None
SRR6044942 HR-TB lineage4.9 None
SRR1180226 HR-TB lineage4.9 None
ERR2693231 HR-TB La1.6;La3;lineage4.6.4;lineage4.9 None
ERR987729 MDR-TB lineage3.1.2.1;lineage3.1.2.2 None
SRR3675234 HR-TB La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR6046133 HR-TB lineage4.9 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
SRR6046397 RR-TB M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR4798648 MDR-TB lineage3.1.2.2 None
SRR5341470 MDR-TB lineage4.9;lineage9 None
ERR502524 MDR-TB lineage4.9;lineage6.3 None
ERR323053 MDR-TB La2;lineage4.9;lineage9 None
ERR1034652 Other La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 None
ERR176751 HR-TB lineage4.9 None
SRR1183111 HR-TB lineage4.9 None
ERR4828872 RR-TB lineage4.2;lineage4.9 None
SRR6046720 HR-TB lineage4.9;lineage9 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
SRR1183106 RR-TB lineage2.2.1.1 None
SRR6046485 Other lineage4.9 None
ERR176560 HR-TB La1.7;lineage4.9 None
ERR11252599 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 None
ERR176568 HR-TB La3;lineage2.1;lineage4.9 None
SRR6046460 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR2693245 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR1172310 MDR-TB lineage4.9 None
ERR3797061 Other La1.6;La3;lineage4.9 None
ERR1063857 MDR-TB La2;lineage4.9 None
ERR2693254 Other La1.6;La3;lineage4.9 None