Rv0001 - c.1023C>T
Drug resistance types
3 Sensitive
3 RR-TB
24 HR-TB
8 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
10 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 10 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| La1.2.BCG | 1 |
| La1.7;lineage4.9 | 2 |
| 2 | |
| lineage4.9;lineage7 | 2 |
| lineage4.2;lineage4.9 | 3 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La2;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 2 |
| La2;lineage4.9;lineage9 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage2.2.1 | 4 |
| lineage4.3.2;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage4.9;lineage6.3 | 1 |
| lineage4.3.4 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage2.1;lineage4.9 | 2 |
| lineage4.9;lineage9 | 1 |
| lineage3.1.2.2 | 1 |
| lineage2.2.1.1 | 2 |
| La1.2 | 1 |
| lineage3.1.2.1;lineage3.1.2.2 | 1 |
| lineage3 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 48 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1183111 | HR-TB | lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4798262 | HR-TB | La1.2.BCG | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR987722 | MDR-TB | None | ERR212001 | HR-TB | None | ERR176778 | HR-TB | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR6044835 | Other | lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR387051 | Other | lineage4.9 | None | ERR161034 | HR-TB | lineage4.3.4.2.1 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | SRR6046593 | Other | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | SRR23961549 | Other | La1.2 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | ERR987729 | HR-TB | lineage3.1.2.1;lineage3.1.2.2 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR4798504 | RR-TB | lineage3 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None |
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