Rv0001 - c.1024T>C


Drug resistance types
10 Sensitive 10 RR-TB 87 HR-TB 44 MDR-TB 1 Pre-XDR-TB 1 XDR-TB 108 Other
lineage Counts
lineage Count
lineage2.2.1 11
lineage4.9;lineage6.3 6
lineage4.9 41
La1.7;lineage4.9 2
lineage4.9;lineage7 2
M.canetti;lineage4.9 5
19
lineage2.1;lineage4.9 15
La3;lineage4.9 4
M.canetti;lineage2.1;lineage4.9;lineage6.3 6
La3;M.canetti;lineage4.8;lineage4.9 1
lineage4.2;lineage4.9 3
M.canetti;lineage2.1;lineage4.9 19
lineage4.8 2
La3;M.canetti;lineage2.1;lineage4.9 9
lineage4.3.4 1
La3;lineage2 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 1
La3;lineage2.1;lineage4.9 2
La2;lineage2.2 1
lineage2.1;lineage6.3 2
La3;lineage2.1;lineage4.9;lineage6.3 4
lineage2.1;lineage4.9;lineage6.3 10
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 3
La2;lineage4.9 2
lineage3.1.2.2 1
lineage1.2.2.2 1
lineage4.9;lineage9 2
M.canetti;lineage2.1;lineage4.1.2.1 1
lineage4 2
lineage2.1;lineage4.9;lineage6.3;lineage8 1
lineage1.1.3.1 1
La3;lineage4.8 2
lineage2.1 2
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 1
lineage4.2;lineage4.8.1;lineage4.9 2
lineage4.6.2.2 1
lineage2.2.1.1 2
La1.2.BCG 1
La3;M.canetti;lineage3.1 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 3
lineage4.1.2.1 3
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 3
lineage4.3.2;lineage4.9 1
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 2
lineage4.1.1.1 2
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 1
La1.2.BCG;La1.8.1 1
lineage3.1;lineage9 1
M.canetti;lineage4.2;lineage4.9 1
lineage4.6.1.1 1
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 1
lineage4.3.4.2.1 1
lineage6.3.1 1
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
La1.6;La3;lineage4.6.4;lineage4.9 1
lineage1.1;lineage4 1
La1.7;M.canetti;lineage4.9 2
lineage3 2
La1.7.1;La1.7.X-unk4 1
La1.6;La3;M.canetti;lineage2.1;lineage4.9 1
lineage2.1;lineage4.1.1.1;lineage6.3 2
M.canetti;lineage2.1;lineage4.1.4;lineage4.9 1
lineage4.3.2 1
La2;lineage4.9;lineage9 1
La1.7.1;lineage4.9 1
La3 2
lineage4.1.3 2
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
La1.7;lineage4.9;lineage7 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La1.7.1 1
lineage2.1;lineage4.9;lineage7 1
M.canetti;lineage4.1.1.3;lineage6.3;lineage8 1
M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 1
lineage6.1.3 1
La3;M.canetti;lineage4.9 1
La3;lineage2.1;lineage6.3 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage3.1.2.1;lineage3.1.2.2 1
La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 1
La3;M.canetti;lineage2.1;lineage3.1 1
M.canetti;lineage4.3.1;lineage4.9 1
M.canetti;lineage2.1;lineage6.3 2
La1;lineage4.9 1
lineage4.3.4.1 1
lineage4.8.1 1
lineage4.4.1.1 1
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
lineage2.1;lineage2.2;lineage6.3 1
M.canetti;lineage2.1 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
spoligotype Counts
spoligotype Count
None 261
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR4814352 Other lineage2.2.1 None
SRR28119756 Other lineage4.9;lineage6.3 None
ERR176778 HR-TB lineage4.9 None
ERR212034 HR-TB La1.7;lineage4.9 None
SRR1180226 HR-TB lineage4.9 None
SRR3675539 HR-TB lineage4.9;lineage7 None
SRR3675487 Other M.canetti;lineage4.9 None
ERR4819781 Other lineage2.2.1 None
SRR1640750 Other None
SRR3675572 Other None
SRR5341333 Other lineage2.1;lineage4.9 None
SRR3675510 Sensitive La3;lineage4.9 None
ERR5311098 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR038268 HR-TB La3;M.canetti;lineage4.8;lineage4.9 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR4828872 Sensitive lineage4.2;lineage4.9 None
ERR176658 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR9786569 Other lineage4.8 None
ERR323063 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR3675275 Other lineage4.9 None
ERR736817 HR-TB lineage4.3.4 None
SRR20969677 HR-TB La3;lineage2 None
ERR3283019 Other lineage2.1;lineage4.9 None
ERR3797044 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 None
SRR6046514 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
ERR4817735 Other lineage4.8 None
ERR1063839 MDR-TB La2;lineage2.2 None
ERR5311081 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR9119669 HR-TB lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR5311100 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675495 Other lineage2.1;lineage4.9 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6325445 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
ERR1063857 MDR-TB La2;lineage4.9 None
ERR5311078 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4798648 MDR-TB lineage3.1.2.2 None
SRR12708411 HR-TB lineage1.2.2.2 None
SRR6046720 HR-TB lineage4.9;lineage9 None
SRR6458421 MDR-TB lineage2.2.1 None
ERR1063862 HR-TB lineage4.9 None
SRR3675236 Other None
SRR3675524 Other lineage4.9;lineage6.3 None
SRR6045399 Other M.canetti;lineage4.9 None
ERR1023295 MDR-TB M.canetti;lineage2.1;lineage4.1.2.1 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
ERR3283044 Other lineage4 None
SRR3675464 HR-TB lineage2.1;lineage4.9;lineage6.3;lineage8 None
ERR8479578 Sensitive lineage1.1.3.1 None
ERR5336148 Other lineage2.1;lineage6.3 None
SRR7496509 Other None
ERR12015083 Other La3;lineage4.8 None
ERR4797054 Pre-XDR-TB lineage2.1 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
ERR5311096 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR323043 Other lineage2.1;lineage4.9 None
ERR3283017 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 None
SRR1183111 HR-TB lineage4.9 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
ERR9786645 Other lineage4.6.2.2 None
SRR1180147 Other lineage2.2.1.1 None
SRR1184294 Other lineage4.9 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR1873393 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4798262 HR-TB La1.2.BCG None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
ERR323038 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3797014 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR4800527 MDR-TB lineage2.2.1 None
ERR386953 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR7131023 Other lineage4.1.2.1 None
ERR3797070 Other lineage4.9 None
ERR176560 HR-TB La1.7;lineage4.9 None
SRR3675221 Other lineage4.9 None
ERR212001 HR-TB None
ERR9787197 Other None
SRR28119752 Other lineage4.9 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR124652 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR126600 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR181824 HR-TB lineage4.9 None
SRR19295647 Sensitive lineage4.9 None
ERR323047 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR736875 HR-TB lineage4.9 None
ERR736865 HR-TB lineage4.3.2;lineage4.9 None
SRR1184372 MDR-TB None
ERR502524 HR-TB lineage4.9;lineage6.3 None
ERR6358837 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR3797016 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675232 Other lineage4.1.2.1 None
SRR25827507 MDR-TB lineage4.1.1.1 None
SRR3675465 Other lineage4.9;lineage6.3 None
ERR1063858 HR-TB lineage4.9 None
ERR1034652 Other La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR181744 HR-TB La3;lineage4.9 None
SRR25827418 XDR-TB lineage3.1;lineage9 None
SRR3675571 HR-TB M.canetti;lineage4.2;lineage4.9 None
ERR1035239 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1172310 HR-TB lineage4.9 None
ERR6358755 Other lineage4.6.1.1 None
ERR3283024 Other La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 None
ERR161034 HR-TB lineage4.3.4.2.1 None
ERR9787139 Other lineage6.3.1 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4817896 HR-TB lineage2.2.1 None
ERR3797069 Other lineage4.9 None
SRR26399973 Other La3;lineage4.9 None
SRR1173355 Other lineage4.9 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR3797017 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR7496517 Other None
ERR5311101 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323039 HR-TB La2;lineage4.9 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
SRR3675231 MDR-TB lineage4.9;lineage7 None
ERR126608 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR2693231 Other La1.6;La3;lineage4.6.4;lineage4.9 None
ERR4819322 Other lineage1.1;lineage4 None
ERR323040 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR323115 Sensitive lineage4.9 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
SRR6046066 Other lineage4.9 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR2027263 Other lineage4 None
ERR4769521 RR-TB lineage4.9 None
SRR16156817 Other lineage4.9 None
ERR3468544 Other lineage2.1;lineage4.9 None
SRR6046593 Other lineage4.9 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
ERR4816999 Other None
ERR4798504 RR-TB lineage3 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
ERR3283016 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1196546 Other lineage4.9 None
ERR3283020 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.9 None
SRR6325447 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
SRR1184380 Other lineage2.1;lineage4.9 None
ERR5311082 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
SRR3675561 Other M.canetti;lineage2.1;lineage4.9 None
ERR9117805 Other lineage4.3.2 None
ERR323053 MDR-TB La2;lineage4.9;lineage9 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
ERR5311089 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1165699 Other lineage4.9 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4816466 HR-TB lineage4.9 None
SRR1172728 RR-TB La3 None
ERR9117709 Other None
ERR9786611 HR-TB lineage4.1.3 None
SRR3675449 Other M.canetti;lineage4.9 None
SRR3675450 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR29017461 Other La3;lineage4.9 None
SRR3675494 RR-TB lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR5311102 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4798493 MDR-TB lineage2.2.1 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1183144 Other lineage2.2.1 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
SRR3675320 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9 None
SRR1183106 RR-TB lineage2.2.1.1 None
SRR11662690 HR-TB lineage4.9 None
SRR6046026 RR-TB lineage4.2;lineage4.9 None
ERR9786642 Other lineage4.1.2.1 None
SRR3675554 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR987722 MDR-TB None
SRR25827682 Other None
SRR6325442 HR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
SRR6789621 Other lineage4.9 None
ERR9786671 Other None
SRR12142341 HR-TB lineage2.1 None
SRR6046295 HR-TB lineage4.2;lineage4.9 None
SRR6046397 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR7240492 HR-TB La1.7.1 None
ERR9786604 Other None
SRR3675555 HR-TB lineage2.1;lineage4.9;lineage7 None
SRR3675558 HR-TB M.canetti;lineage4.1.1.3;lineage6.3;lineage8 None
SRR1165667 Other lineage4.9;lineage6.3 None
SRR6046382 Sensitive lineage2.2.1 None
SRR3675568 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 None
SRR6045380 Other lineage2.1;lineage4.9 None
SRR6045242 Other lineage2.1;lineage4.9 None
SRR23961558 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6045952 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4407463 HR-TB None
ERR9787165 Other lineage6.1.3 None
ERR4188342 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675508 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1196583 Other lineage4.9 None
ERR3468607 Other lineage4.9 None
ERR2693229 RR-TB La3;M.canetti;lineage4.9 None
SRR6046540 Other lineage2.1;lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR18213713 HR-TB None
ERR987729 HR-TB lineage3.1.2.1;lineage3.1.2.2 None
ERR4817893 Other La3;lineage4.8 None
ERR2693257 Other La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 None
ERR323058 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR387051 Other lineage4.9 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675506 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311083 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
ERR8665994 Other lineage4.9 None
ERR13285068 Sensitive lineage4.9 None
SRR6044790 Other lineage2.1;lineage4.9 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR736839 HR-TB M.canetti;lineage4.9 None
ERR181887 Other lineage4.9 None
SRR1174897 MDR-TB lineage4.9;lineage9 None
SRR13423649 Sensitive lineage2.2.1 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6789626 Other None
ERR4797588 MDR-TB lineage3 None
ERR9119138 RR-TB M.canetti;lineage4.3.1;lineage4.9 None
ERR294266 HR-TB lineage4.2;lineage4.8.1;lineage4.9 None
SRR6458423 HR-TB lineage2.2.1 None
SRR3675481 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR176793 Other lineage4.1.1.1 None
ERR2229143 RR-TB lineage4.9 None
SRR3675515 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR2693230 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR3804169 HR-TB lineage4.1.3 None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
SRR3675518 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR133825 HR-TB La1;lineage4.9 None
ERR5311099 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR1063849 HR-TB lineage4.9 None
SRR1172817 Other La3 None
SRR3675581 Other lineage2.1;lineage4.9 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR11465352 Sensitive lineage4.3.4.1 None
SRR26937107 MDR-TB lineage2.2.1 None
SRR12708389 MDR-TB lineage4.8.1 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
SRR29050859 Other lineage4.9 None
SRR6044835 Other lineage4.9 None
ERR4816559 MDR-TB lineage4.4.1.1 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
ERR8976043 HR-TB lineage2.1;lineage2.2;lineage6.3 None
SRR6046225 Other lineage4.9;lineage6.3 None
SRR6045892 Sensitive lineage4.9 None
SRR7496472 Other lineage4.9 None
ERR5311090 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323041 HR-TB M.canetti;lineage2.1 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR1184381 MDR-TB None
SRR6325448 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR28119805 Other lineage4.9 None
ERR234659 Other None