Rv1630 - c.1113G>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
14 Sensitive
2 RR-TB
23 HR-TB
8 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
35 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.8 | 2 |
| lineage6.1.1 | 2 |
| lineage4.9 | 24 |
| La1.7;lineage4.9 | 10 |
| 2 | |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage4.9;lineage6.3 | 2 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage4.9;lineage7 | 3 |
| La1.7 | 2 |
| lineage4.9;lineage9 | 2 |
| lineage2.2.1 | 6 |
| lineage4.6 | 4 |
| lineage3 | 3 |
| lineage1.1.2 | 1 |
| M.canetti;lineage1 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| La1.8.1 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage4.6.3;lineage4.9 | 2 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| La2;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 2 |
| La2;lineage4.9;lineage9 | 1 |
| lineage3.1.2.1 | 1 |
| lineage3.1.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 84 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR9786444 | Sensitive | lineage4.8 | None | ERR9787014 | Other | lineage6.1.1 | None | SRR8217918 | HR-TB | lineage4.9 | None | SRR29096150 | Other | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | ERR176740 | Other | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR29097037 | Other | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR987722 | MDR-TB | None | ERR212001 | HR-TB | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR387051 | Other | lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR369151 | Other | lineage4.9 | None | ERR2693227 | Sensitive | lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR4830353 | Other | La1.7 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR13266684 | Pre-XDR-TB | lineage2.2.1 | None | SRR28170702 | Sensitive | lineage4.6 | None | ERR4798504 | RR-TB | lineage3 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR11043242 | Other | lineage4.6 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | SRR15315876 | Sensitive | lineage2.2.1 | None | SRR7236330 | Other | La1.8.1 | None | SRR29097026 | Other | lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR11252664 | Other | lineage2.2.1 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR29096410 | Other | lineage4.9 | None | ERR4816322 | Other | lineage4.9 | None | SRR3675222 | Other | La1.7 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | SRR3675582 | Other | lineage4.9 | None | SRR29053108 | Sensitive | lineage4.6 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | SRR17832802 | HR-TB | lineage3 | None | ERR4596910 | Sensitive | lineage4.9 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | ERR176751 | Other | lineage4.9 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR13267581 | Other | lineage4.6 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | ERR323107 | Sensitive | lineage4.9 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR400529 | Other | lineage3 | None | ERR4816852 | Other | lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None |
|---|
