lineage | Count |
---|---|
94 | |
lineage4 | 19 |
lineage4.9 | 5 |
lineage2 | 3 |
lineage3 | 1 |
lineage3.1.2 | 2 |
lineage4.6.1.1 | 1 |
lineage1.1.2 | 1 |
lineage4.6.2.2 | 2 |
La3 | 1 |
lineage4.5 | 1 |
lineage4.8 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage4.9;La3 | 1 |
lineage4.1.1 | 1 |
lineage2.2.1 | 3 |
lineage4.3 | 1 |
lineage2.2 | 2 |
lineage4.8;La3 | 1 |
La1.8.1 | 1 |
La2 | 1 |
spoligotype | Count |
---|---|
None | 143 |
ID | Drug resistance | Lineage | Country iso2 | ERR323043 | HR-TB | None | ERR323038 | HR-TB | None | ERR323039 | HR-TB | None | ERR323066 | Sensitive | lineage4 | None | ERR323063 | HR-TB | None | ERR323053 | HR-TB | None | ERR3283036 | HR-TB | None | ERR1034634 | HR-TB | None | ERR1063862 | HR-TB | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3283017 | HR-TB | None | ERR323085 | Sensitive | lineage4 | None | ERR1063858 | HR-TB | None | ERR1063896 | Sensitive | None | ERR137286 | Sensitive | lineage4 | None | ERR3283027 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3797016 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797043 | HR-TB | None | ERR387051 | HR-TB | None | ERR3797069 | Other | None | ERR4188350 | HR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4800341 | Other | lineage3 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4810741 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811022 | HR-TB | None | ERR736834 | Sensitive | lineage4 | None | ERR5336148 | Other | None | ERR702406 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6358837 | HR-TB | None | ERR736839 | Other | None | ERR736835 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR736872 | Sensitive | lineage4 | None | ERR736865 | HR-TB | None | ERR736867 | HR-TB | None | ERR751326 | Sensitive | lineage4 | None | ERR736874 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9117709 | HR-TB | None | ERR987722 | HR-TB | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | SRR1169194 | Other | None | SRR10808805 | Sensitive | None | SRR1158918 | Sensitive | lineage4 | None | SRR1167384 | Other | lineage4 | None | SRR1172817 | HR-TB | None | SRR1169306 | Other | None | SRR1172234 | Other | None | SRR1172310 | HR-TB | None | SRR1172728 | MDR-TB | None | SRR1169249 | Other | La3 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1172951 | Other | None | SRR1173363 | HR-TB | None | SRR1173778 | Other | None | SRR1173568 | Other | lineage4.9 | None | SRR1173629 | Other | None | SRR1175074 | MDR-TB | None | SRR1174897 | HR-TB | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1184294 | HR-TB | None | SRR1184372 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1184388 | Other | None | SRR12416824 | HR-TB | None | SRR1196566 | HR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR12142341 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR15368973 | Other | None | SRR19304036 | HR-TB | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19303884 | HR-TB | None | SRR25827682 | Other | None | ERR11081257 | Other | lineage4.8 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR26399973 | Other | lineage4.9;La3 | None | ERR212034 | HR-TB | None | SRR3675465 | HR-TB | None | ERR161033 | HR-TB | None | SRR3675221 | HR-TB | None | ERR4815604 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675236 | HR-TB | None | ERR181824 | HR-TB | lineage4 | None | ERR176568 | Other | lineage4.3 | None | ERR176751 | HR-TB | None | SRR3675555 | HR-TB | None | SRR3742665 | HR-TB | None | ERR212123 | Other | None | ERR4817060 | RR-TB | None | SRR3675558 | HR-TB | None | ERR4816466 | HR-TB | None | ERR4819781 | Other | lineage2.2.1 | None | ERR4816585 | Other | lineage2.2 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR4818607 | Sensitive | lineage4.9 | None | ERR4816656 | HR-TB | None | ERR4818021 | Other | La1.8.1 | None | ERR234659 | HR-TB | None | ERR4818929 | HR-TB | None | ERR4818615 | Other | None | SRR5341366 | Sensitive | lineage4 | None | ERR4819280 | Sensitive | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341333 | HR-TB | None | SRR5341302 | HR-TB | None | SRR5341470 | HR-TB | None | SRR5341469 | Other | lineage4 | None | SRR6045555 | HR-TB | None | SRR6046133 | HR-TB | None | SRR6045892 | Sensitive | None | SRR6044790 | HR-TB | None | SRR6045952 | HR-TB | None | SRR6046066 | HR-TB | None | ERR278594 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046397 | Other | None | SRR6046540 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR6046644 | HR-TB | None | ERR11067297 | Sensitive | lineage3.1.2 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR502510 | Sensitive | lineage4 | None | ERR294248 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR502532 | HR-TB | None | ERR5311090 | HR-TB | None | ERR5311081 | HR-TB | None |
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