Rv1484 - c.-542C>A
Drug resistance types
22 Sensitive
2 RR-TB
73 HR-TB
9 MDR-TB
0 Pre-XDR-TB
2 XDR-TB
102 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.7;M.canetti;lineage4.9 | 4 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 4 |
| 14 | |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 6 |
| lineage4.1.2.1 | 5 |
| lineage2.1 | 3 |
| M.canetti;lineage2.2 | 2 |
| lineage4.9;lineage7 | 1 |
| lineage4.9 | 39 |
| M.canetti;lineage2.1;lineage4.9 | 11 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9 | 9 |
| lineage4.9;lineage6.3 | 9 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage4.8 | 1 |
| lineage2.2.1 | 4 |
| lineage2.1;lineage4.9 | 13 |
| lineage4.7 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 3 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.9 | 8 |
| lineage3 | 6 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| lineage4.1.3 | 1 |
| lineage1.1.3.1 | 1 |
| La1.7;lineage4.9 | 3 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage5.2 | 2 |
| lineage2.1;lineage4.1.1.1;lineage6.3 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 4 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| La1.7 | 2 |
| lineage4.6.1.1 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage2.2 | 1 |
| La1;lineage4.9 | 1 |
| La3 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage3.1 | 1 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| lineage2.1;lineage2.2;lineage6.3 | 1 |
| lineage4.6.2.2 | 1 |
| La1.2.BCG | 1 |
| lineage4.2;lineage4.9 | 2 |
| lineage4.1;lineage4.8 | 1 |
| La1.7.1 | 1 |
| La1.6;lineage4 | 1 |
| La3;M.canetti;lineage4.8;lineage4.9 | 1 |
| La1.8.1 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La3;lineage4 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 1 |
| La3;lineage2 | 1 |
| M.canetti;lineage4.9 | 3 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage4.5 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage1.2.2.2 | 1 |
| lineage2.1;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 210 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | SRR3675554 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR234659 | Other | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR9786601 | Other | lineage4.1.2.1 | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | SRR6045555 | Other | lineage4.9 | None | SRR3675243 | Other | lineage4.9 | None | SRR3675572 | Other | None | SRR3675444 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | ERR323060 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR6358837 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR3797016 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4407463 | HR-TB | None | SRR1172951 | Other | lineage4.9 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR176658 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9786569 | Other | lineage4.8 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR28351584 | HR-TB | lineage2.2.1 | None | ERR3468607 | Other | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR4195592 | Sensitive | lineage4.7 | None | ERR323063 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR9119669 | HR-TB | lineage4.9 | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR3416776 | Other | lineage2.1 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR1035157 | Other | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | SRR29096647 | HR-TB | lineage3 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | SRR3675464 | HR-TB | lineage2.1;lineage4.9;lineage6.3;lineage8 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9117709 | Other | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR29097026 | Other | lineage4.9 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR29017081 | Sensitive | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR6325442 | HR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR124652 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR126600 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR9786421 | Other | lineage4.1.2.1 | None | SRR3675558 | HR-TB | M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | None | SRR3675545 | Other | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675568 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR5311098 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1173778 | Other | lineage4.9 | None | SRR1196768 | MDR-TB | None | SRR3675322 | HR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR3675222 | Other | La1.7 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR6358755 | Other | lineage4.6.1.1 | None | SRR18213713 | HR-TB | None | ERR323058 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR3675506 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | ERR126608 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR4816585 | Other | lineage2.2 | None | ERR323040 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4815604 | Other | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR29772713 | MDR-TB | lineage3 | None | SRR28119753 | Other | lineage4.9 | None | SRR3675248 | Other | lineage4.9 | None | SRR1196546 | Other | lineage4.9 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR3675561 | Other | M.canetti;lineage2.1;lineage4.9 | None | SRR23961542 | Other | La1;lineage4.9 | None | ERR4800341 | Other | lineage3 | None | ERR4816466 | HR-TB | lineage4.9 | None | ERR4188350 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1172817 | Other | La3 | None | SRR7496509 | Other | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR5311096 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR1184346 | HR-TB | lineage3.1 | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | ERR8976043 | HR-TB | lineage2.1;lineage2.2;lineage6.3 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR7496472 | Other | lineage4.9 | None | ERR323033 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR4798262 | HR-TB | La1.2.BCG | None | ERR9786843 | Other | None | SRR3675221 | Other | lineage4.9 | None | ERR473314 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | SRR6044815 | Other | lineage4.9 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR323047 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR9786525 | Other | lineage4.1;lineage4.8 | None | SRR7240492 | HR-TB | La1.7.1 | None | ERR9786604 | Other | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR28351554 | Sensitive | La1.6;lineage4 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | ERR2693252 | Sensitive | lineage4.9 | None | SRR29096410 | Other | lineage4.9 | None | ERR038268 | HR-TB | La3;M.canetti;lineage4.8;lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | SRR6045952 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR22251677 | Sensitive | lineage3 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR3283028 | Other | La3;lineage4 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR5311083 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR13285068 | Sensitive | lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR28044952 | MDR-TB | lineage3 | None | SRR1165628 | Other | La3;lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4830353 | Other | La1.7 | None | SRR1169249 | Other | lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR3675486 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | SRR29050859 | Other | lineage4.9 | None | ERR4816999 | Other | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR6789626 | Other | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR4818298 | Sensitive | lineage3 | gb | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR3283016 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR29231479 | RR-TB | lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR13194418 | Sensitive | lineage4.5 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR29093909 | Other | lineage4.9 | None | SRR6044942 | HR-TB | lineage4.9 | None | SRR3675236 | Other | None | ERR278594 | HR-TB | lineage2.1;lineage4.9 | None | SRR3675515 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR7535086 | Other | None | ERR5311089 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR29096387 | Sensitive | M.canetti;lineage4.9 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR28119777 | Other | lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR176766 | HR-TB | lineage2.1;lineage4.9 | None | SRR3675549 | Other | lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR28119827 | Other | La3;lineage4.9 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR3675450 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR176751 | Other | lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR323038 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR386953 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None |
|---|
