Rv1221 - c.501C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
19 Sensitive
5 RR-TB
23 HR-TB
6 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
34 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.1.3 | 1 |
| lineage3.1.2.1 | 1 |
| lineage2.2.1 | 6 |
| lineage4.9 | 38 |
| lineage4.8 | 2 |
| lineage4.2;lineage4.9 | 3 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage6.3 | 1 |
| La3;lineage4.9 | 9 |
| La2;lineage4.9 | 1 |
| lineage4.9;lineage9 | 1 |
| lineage4.3.4 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage1.1.1 | 1 |
| M.canetti;lineage4.9 | 2 |
| lineage2.2.1.1 | 2 |
| La1;lineage4.9 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| La3;lineage4 | 1 |
| lineage4 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage6.1.1 | 2 |
| lineage1.1.3.1 | 1 |
| 1 | |
| lineage4.9;lineage6.1.3 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage3 | 1 |
| La1.7.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 88 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR11466044 | Other | lineage4.1.1.3 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | ERR4769452 | Other | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR4822504 | Sensitive | lineage4.8 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR2446566 | Other | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR13262253 | Sensitive | lineage4.8 | None | ERR2660539 | Other | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR212138 | HR-TB | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR1183144 | Other | lineage2.2.1 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR3797079 | Sensitive | lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | SRR6045053 | Other | lineage4 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR29096710 | Sensitive | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | SRR29096394 | Sensitive | lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR9787014 | Other | lineage6.1.1 | None | SRR20970016 | Other | lineage2.2.1 | None | SRR29097066 | Sensitive | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR3797065 | RR-TB | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR987722 | MDR-TB | None | SRR6046878 | Other | lineage4.9 | None | ERR2693252 | Sensitive | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR176651 | Other | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | SRR6046046 | Other | lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR4769450 | Other | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR4798504 | RR-TB | lineage3 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR3797043 | Sensitive | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None |
|---|
