Rv3457c - c.693C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
39 Sensitive
1 RR-TB
20 HR-TB
16 MDR-TB
2 Pre-XDR-TB
1 XDR-TB
22 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 48 |
| lineage2.2.1 | 7 |
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage4.9;lineage6.3 | 1 |
| lineage3.1;lineage9 | 1 |
| lineage4.5 | 4 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage4.9;lineage9 | 2 |
| lineage4.1;lineage4.9 | 1 |
| lineage6.1.1 | 2 |
| lineage3.1.2.2 | 1 |
| M.canetti;lineage1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| 2 | |
| lineage4 | 2 |
| lineage1;lineage4.9 | 1 |
| lineage2.2.2 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage4.6.2.2 | 2 |
| lineage4.8 | 1 |
| lineage3 | 3 |
| lineage3.1.2.1 | 1 |
| lineage1.1.1;lineage4 | 1 |
| lineage5.1.4 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage4.3.4.2.1 | 1 |
| lineage2.2.1;lineage4 | 1 |
| La2;lineage4.9 | 1 |
| lineage4.4.1.1 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4.3 | 1 |
| lineage2.2 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 101 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR10808730 | Other | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR3675477 | Sensitive | lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | SRR29096410 | Other | lineage4.9 | None | SRR5067267 | HR-TB | lineage4.5 | vn | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR6866410 | Sensitive | lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR3675279 | Sensitive | lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR9787014 | Other | lineage6.1.1 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675247 | Other | lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR29096150 | Other | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR779852 | Sensitive | lineage4.9 | None | SRR29097037 | Other | lineage4.9 | None | ERR987722 | MDR-TB | None | SRR28351339 | MDR-TB | lineage4 | None | ERR2517475 | Other | lineage4 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | DRR185108 | Sensitive | lineage2.2.2 | vn | SRR5073609 | HR-TB | lineage4.5 | vn | ERR4811030 | Sensitive | lineage4.9 | None | SRR6046611 | Sensitive | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | SRR12708384 | Sensitive | lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR13278785 | MDR-TB | lineage4.6.2.2 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR9786076 | Sensitive | lineage3 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR6046564 | Sensitive | lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | SRR17832802 | HR-TB | lineage3 | None | SRR12708372 | Sensitive | lineage4.9 | None | SRR20970016 | Other | lineage2.2.1 | None | ERR4812155 | Other | lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR3675229 | Sensitive | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR29097026 | Other | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | SRR12708416 | Sensitive | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | ERR11082350 | MDR-TB | lineage4.6.2.2 | None | ERR4769444 | HR-TB | lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | ERR369151 | Other | lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR4798504 | RR-TB | lineage3 | None | SRR26937004 | MDR-TB | lineage4.5 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR867542 | HR-TB | lineage4.3 | None | ERR212138 | HR-TB | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675387 | Other | lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | ERR6358951 | Sensitive | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR176740 | Other | lineage4.9 | None | ERR6359070 | Sensitive | lineage4.9 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None |
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