Rv0006 - c.1947G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
24 Sensitive
2 RR-TB
45 HR-TB
12 MDR-TB
3 Pre-XDR-TB
3 XDR-TB
48 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 56 |
| La1.7.1 | 1 |
| lineage4.6.2.2 | 2 |
| lineage2.2.1 | 9 |
| La3;lineage4.9 | 8 |
| lineage1.1.3.2 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2 | 2 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| 6 | |
| La1;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage3.1.2.1;lineage4 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage4.9;lineage9 | 2 |
| lineage4.4.1.2 | 1 |
| lineage6.1.1 | 2 |
| lineage4.1.2.1 | 2 |
| La1.7.1;lineage4.9 | 1 |
| lineage3.1.2.1 | 1 |
| lineage3 | 1 |
| La1.8.1 | 1 |
| lineage1.1.2 | 1 |
| lineage2.2.1.1 | 2 |
| lineage4.6.3;lineage4.9 | 2 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| La1.6;lineage4 | 1 |
| M.canetti;lineage2.2 | 2 |
| lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage3.1;lineage9 | 1 |
| La1.7;lineage4.9 | 2 |
| La2;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4 | 1 |
| lineage4.3.4.2.1 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage2.2.1;lineage3;lineage4 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage4.2;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage2.2.1.2 | 1 |
| lineage4.3.4 | 1 |
| lineage4.8 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage3.1.2.2 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 137 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR176779 | HR-TB | lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR28868888 | Other | lineage1.1.3.2 | None | SRR29096150 | Other | lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR29097037 | Other | lineage4.9 | None | ERR9786843 | Other | None | ERR234659 | Other | None | ERR181824 | HR-TB | lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR28351455 | Other | lineage3.1.2.1;lineage4 | None | ERR3797029 | Other | lineage4.9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | SRR1181020 | Other | lineage2.2.1 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR6045347 | Other | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | ERR323037 | Other | lineage4.9 | None | SRR20970016 | Other | lineage2.2.1 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | SRR7240033 | Other | La1.8.1 | None | SRR29097026 | Other | lineage4.9 | None | SRR6964633 | MDR-TB | lineage1.1.2 | None | SRR29097054 | Sensitive | lineage4.9 | None | SRR29051386 | Sensitive | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR6359082 | Other | lineage4.9 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR10808730 | Other | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR28351554 | Sensitive | La1.6;lineage4 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | SRR29096203 | Sensitive | lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | ERR176651 | Other | lineage4.9 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | SRR5535933 | Other | lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR181887 | Other | lineage4.9 | None | ERR4797201 | Other | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4811311 | Other | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR9786525 | Other | lineage4 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR926163 | Other | lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR11465015 | Sensitive | lineage4.3.4.2.1 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR25827605 | Pre-XDR-TB | lineage2.2.1;lineage3;lineage4 | None | ERR4816466 | HR-TB | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR987722 | MDR-TB | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR29096410 | Other | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | SRR1175127 | Other | lineage2.2.1.2 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR1183049 | RR-TB | lineage2.2 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | SRR14782054 | Other | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR6358991 | HR-TB | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None |
|---|
