Rv0668 - c.1644C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
16 Sensitive
58 RR-TB
21 HR-TB
9 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
12 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 18 |
| lineage2.2.1 | 71 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage5.1 | 1 |
| lineage4.2;lineage4.9 | 2 |
| lineage4.9;lineage6.3 | 2 |
| lineage2.1;lineage4.9 | 1 |
| lineage4.9;lineage9 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| 1 | |
| lineage4.3.2;lineage4.9 | 1 |
| lineage4.7 | 1 |
| lineage4.3.3 | 2 |
| lineage4.4.1.2 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.5 | 1 |
| lineage3 | 2 |
| lineage6.1.3 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La2;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4 | 1 |
| lineage4.8 | 1 |
| lineage3.1.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 118 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR29050928 | Other | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR4033152 | RR-TB | lineage2.2.1 | za | SRR4033158 | RR-TB | lineage2.2.1 | za | SRR4033160 | RR-TB | lineage2.2.1 | za | SRR4033166 | RR-TB | lineage2.2.1 | za | SRR4033157 | RR-TB | lineage2.2.1 | za | SRR4033180 | RR-TB | lineage2.2.1 | za | SRR4033183 | RR-TB | lineage2.2.1 | za | SRR4033199 | RR-TB | lineage2.2.1 | za | SRR4033153 | RR-TB | lineage2.2.1 | za | SRR4033211 | RR-TB | lineage2.2.1 | za | SRR4033173 | RR-TB | lineage2.2.1 | za | SRR4033204 | RR-TB | lineage2.2.1 | za | SRR4033191 | RR-TB | lineage2.2.1 | za | SRR4033182 | RR-TB | lineage2.2.1 | za | SRR4033170 | RR-TB | lineage2.2.1 | za | SRR4033187 | RR-TB | lineage2.2.1 | za | SRR4033174 | RR-TB | lineage2.2.1 | za | SRR4033208 | RR-TB | lineage2.2.1 | za | SRR4033159 | RR-TB | lineage2.2.1 | za | SRR4033197 | RR-TB | lineage2.2.1 | za | SRR4033181 | RR-TB | lineage2.2.1 | za | SRR4033195 | RR-TB | lineage2.2.1 | za | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR5336150 | Sensitive | lineage5.1 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | SRR6896513 | Sensitive | lineage2.2.1 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR6045191 | Sensitive | lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | ERR11252401 | Sensitive | lineage2.2.1 | None | ERR11488402 | MDR-TB | lineage2.2.1 | None | SRR6046492 | Other | lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | SRR6896180 | Sensitive | lineage2.2.1 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR4033161 | RR-TB | lineage2.2.1 | za | ERR11252421 | Sensitive | lineage2.2.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR987722 | MDR-TB | None | SRR10808730 | Other | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR7496523 | Other | lineage4.7 | None | SRR2101314 | Sensitive | lineage2.2.1 | None | ERR2515306 | Sensitive | lineage2.2.1 | za | ERR133985 | HR-TB | lineage4.3.3 | ru | SRR29096410 | Other | lineage4.9 | None | SRR4033154 | RR-TB | lineage2.2.1 | za | SRR4033165 | RR-TB | lineage2.2.1 | za | SRR4033169 | RR-TB | lineage2.2.1 | za | SRR4033167 | RR-TB | lineage2.2.1 | za | SRR4033172 | RR-TB | lineage2.2.1 | za | SRR4033177 | RR-TB | lineage2.2.1 | za | SRR4033171 | RR-TB | lineage2.2.1 | za | SRR4033194 | RR-TB | lineage2.2.1 | za | SRR4033209 | RR-TB | lineage2.2.1 | za | SRR4033206 | RR-TB | lineage2.2.1 | za | SRR4033196 | RR-TB | lineage2.2.1 | za | SRR4033205 | RR-TB | lineage2.2.1 | za | SRR4033164 | RR-TB | lineage2.2.1 | za | SRR25515103 | Sensitive | lineage2.2.1 | None | SRR4033188 | RR-TB | lineage2.2.1 | za | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR4827706 | HR-TB | lineage4.3.3 | None | ERR752229 | Other | lineage4.5 | None | ERR4798504 | RR-TB | lineage3 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR29441045 | Sensitive | lineage2.2.1 | None | ERR4596910 | Sensitive | lineage4.9 | None | SRR4033207 | RR-TB | lineage2.2.1 | za | SRR29096150 | Other | lineage4.9 | None | ERR1023236 | Other | lineage6.1.3 | None | ERR1750902 | Sensitive | lineage2.2.1 | za | SRR4033210 | Sensitive | lineage2.2.1 | None | SRR4033185 | RR-TB | lineage2.2.1 | za | SRR4033175 | RR-TB | lineage2.2.1 | za | SRR29097037 | Other | lineage4.9 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR11773736 | Pre-XDR-TB | lineage2.2.1 | None | ERR11773810 | Pre-XDR-TB | lineage2.2.1 | None | ERR3283055 | HR-TB | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR4033201 | RR-TB | lineage2.2.1 | za | ERR11488859 | MDR-TB | lineage2.2.1 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR1172310 | HR-TB | lineage4.9 | None | SRR4033155 | RR-TB | lineage2.2.1 | za | SRR4033184 | RR-TB | lineage2.2.1 | za | ERR13289297 | RR-TB | lineage2.2.1 | None | SRR4033163 | RR-TB | lineage2.2.1 | za | SRR4033178 | RR-TB | lineage2.2.1 | za | SRR4033186 | RR-TB | lineage2.2.1 | za | SRR4033176 | RR-TB | lineage2.2.1 | za | SRR4033189 | RR-TB | lineage2.2.1 | za | SRR4033212 | RR-TB | lineage2.2.1 | za | SRR4033192 | RR-TB | lineage2.2.1 | za | SRR4033213 | RR-TB | lineage2.2.1 | za | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4816470 | HR-TB | lineage3 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR7496471 | Sensitive | lineage4 | None | ERR9786444 | Sensitive | lineage4.8 | None | SRR29231479 | RR-TB | lineage4.9 | None | ERR11488858 | MDR-TB | lineage2.2.1 | None | SRR4033198 | RR-TB | lineage2.2.1 | za | ERR987729 | HR-TB | lineage3.1.2.1 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR4033193 | RR-TB | lineage2.2.1 | za | SRR29097026 | Other | lineage4.9 | None |
|---|
