Rv0006 - c.1393C>T
Drug resistance types
72 Sensitive
9 RR-TB
4 HR-TB
30 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
19 Other
lineage Counts
| lineage | Count |
|---|---|
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| lineage4.1 | 69 |
| lineage4.1.1 | 7 |
| lineage1.1.1.1;lineage4.1 | 1 |
| M.canetti;lineage4.2 | 1 |
| lineage3 | 16 |
| lineage6.1.1 | 2 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| lineage4.5 | 1 |
| lineage4.9 | 3 |
| lineage3.1.2.1;lineage3.1.2.2 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage4.9;lineage9 | 2 |
| lineage4.3.2;lineage4.9 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| lineage4.1.2.1 | 2 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| M.canetti;lineage4.6.4;lineage4.9 | 2 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 3 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 2 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage3.1.2.2 | 1 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage4.1.1.1 | 1 |
| lineage1.1.2;lineage3 | 1 |
| 1 | |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.1;lineage4.3.4.2.1 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage4.6.4;lineage4.9 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 137 |
Geographic prevalence
Country level data for this variant is available for 22 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR5341418 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | ERR11068240 | Sensitive | lineage4.1 | None | ERR4195798 | Sensitive | lineage4.1 | None | ERR4811741 | Sensitive | lineage4.1.1 | pe | DRR261151 | HR-TB | lineage1.1.1.1;lineage4.1 | None | SRR27450403 | Sensitive | lineage4.1 | None | ERR8975670 | Other | lineage4.1 | None | DRR261193 | Other | lineage4.1 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | ERR7911764 | Sensitive | lineage4.1 | za | ERR11252426 | Sensitive | lineage4.1 | None | ERR2510506 | MDR-TB | lineage3 | pk | ERR2510517 | Pre-XDR-TB | lineage3 | pk | ERR4821196 | Sensitive | lineage4.1 | gb | ERR1034926 | Sensitive | lineage4.1 | za | SRR21732917 | Sensitive | lineage4.1 | None | ERR6866317 | Sensitive | lineage4.1.1 | None | ERR4820379 | Sensitive | lineage4.1 | None | SRR6964649 | MDR-TB | lineage3 | None | ERR11081114 | Sensitive | lineage4.1 | None | ERR9787014 | RR-TB | lineage6.1.1 | None | ERR11043576 | Sensitive | lineage4.1 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | SRR22048530 | Sensitive | lineage4.1 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | SRR21277684 | Sensitive | lineage4.5 | None | ERR6866329 | Sensitive | lineage4.1.1 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR11050881 | Sensitive | lineage4.1 | None | ERR987729 | MDR-TB | lineage3.1.2.1;lineage3.1.2.2 | None | ERR4822053 | Sensitive | lineage4.1 | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | SRR6982556 | Other | lineage4.1 | None | SRR22048545 | Sensitive | lineage4.1 | None | DRR261107 | Other | lineage4.1 | None | ERR736865 | MDR-TB | lineage4.3.2;lineage4.9 | None | SRR26400053 | Sensitive | lineage4.1 | None | ERR3148062 | MDR-TB | lineage4.1 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR4814862 | Sensitive | lineage4.1 | gb | SRR2101811 | Other | lineage4.1 | None | ERR5311079 | MDR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | ERR2184403 | Sensitive | lineage4.1.1 | pe | SRR1183111 | HR-TB | lineage4.9 | None | ERR11043845 | Sensitive | lineage4.1 | None | ERR2145492 | Sensitive | lineage4.1 | None | SRR10808615 | Sensitive | lineage4.1.1 | None | ERR11068265 | Sensitive | lineage4.1 | None | SRR6964484 | MDR-TB | lineage3 | None | ERR1034947 | Sensitive | lineage4.1 | za | ERR11081047 | Pre-XDR-TB | lineage4.1 | None | SRR27450021 | Other | lineage3 | None | ERR4821092 | Sensitive | lineage4.1 | None | ERR4829270 | Sensitive | lineage4.1 | None | SRR2101661 | Sensitive | lineage4.1 | None | SRR7068992 | Sensitive | lineage3 | None | ERR502889 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR11050885 | Sensitive | lineage4.1 | None | SRR7069705 | Sensitive | lineage3 | None | ERR11068522 | Sensitive | lineage4.1 | None | DRR261117 | Other | lineage4.1 | None | ERR133986 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | ERR11067618 | Sensitive | lineage4.1 | None | ERR4822622 | Sensitive | lineage4.1.2.1 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR5918069 | HR-TB | lineage4.1 | za | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR3439432 | RR-TB | M.canetti;lineage4.6.4;lineage4.9 | None | ERR11068221 | Sensitive | lineage4.1 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR4798504 | RR-TB | lineage3 | None | SRR3675390 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR3323722 | Sensitive | lineage4.1 | None | SRR7069429 | Sensitive | lineage4.1 | None | ERR5311103 | RR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | ERR11068486 | Sensitive | lineage4.1 | None | SRR3675446 | RR-TB | lineage4.9 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR9807024 | Sensitive | lineage4.1 | None | DRR261073 | Other | lineage4.1 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR7911681 | Sensitive | lineage4.1 | za | DRR261056 | Sensitive | lineage4.1 | None | ERR11050349 | Sensitive | lineage4.1 | None | ERR2512462 | Sensitive | lineage3 | gb | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR7911470 | Sensitive | lineage4.1 | za | ERR502524 | MDR-TB | lineage4.9;lineage6.3 | None | ERR1035162 | MDR-TB | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR4820112 | Sensitive | lineage4.1.1.1 | None | ERR2516555 | MDR-TB | lineage4.1 | nl | SRR21732309 | Sensitive | lineage3 | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | DRR261067 | Other | lineage4.1 | None | ERR2515056 | Sensitive | lineage3 | gb | ERR4817207 | Sensitive | lineage4.1 | None | DRR261050 | Other | lineage4.1 | None | ERR6865889 | Other | lineage4.1.1 | None | ERR11069119 | Sensitive | lineage4.1 | None | SRR6964485 | Sensitive | lineage1.1.2;lineage3 | None | ERR9121398 | Sensitive | lineage4.1 | None | ERR11050277 | Sensitive | lineage4.1 | None | ERR11043847 | Sensitive | lineage4.1 | None | ERR987722 | MDR-TB | None | SRR28044323 | Sensitive | lineage3 | None | ERR4822454 | Sensitive | lineage4.1.2.1 | de | SRR7131181 | Sensitive | lineage4.1 | None | ERR3470587 | Other | lineage4.1 | None | ERR4024532 | Other | lineage4.1.1 | None | ERR4822119 | Sensitive | lineage4.1 | gb | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR3470559 | Sensitive | lineage4.1 | None | ERR4808949 | Sensitive | lineage4.1 | None | SRR6982226 | Other | lineage4.1 | None | ERR11067999 | Sensitive | lineage4.1 | None | ERR4797918 | Sensitive | lineage3 | in | SRR26159047 | RR-TB | lineage4.6.3;lineage4.9 | None | ERR8975363 | Sensitive | lineage4.1 | None | ERR4800284 | Pre-XDR-TB | lineage3 | in | SRR3675586 | RR-TB | M.canetti;lineage4.6.4;lineage4.9 | None | DRR261032 | Other | lineage4.1 | None | ERR7911451 | Sensitive | lineage4.1 | za | ERR3799304 | RR-TB | lineage6.1.1 | None | ERR2515070 | Sensitive | lineage3 | gb | ERR11068390 | Sensitive | lineage4.1 | None | SRR10869019 | Sensitive | lineage4.1 | None | ERR11465114 | Sensitive | lineage4.1;lineage4.3.4.2.1 | None | ERR4831458 | MDR-TB | lineage3 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | ERR11044159 | Sensitive | lineage4.1 | None | SRR3725688 | Sensitive | lineage4.1 | None | ERR552508 | Sensitive | lineage4.1 | de | ERR4188322 | Other | lineage4.6.4;lineage4.9 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None |
|---|
