Rv3423c - c.342T>C
Drug resistance types
2 Sensitive
1 RR-TB
26 HR-TB
5 MDR-TB
1 Pre-XDR-TB
2 XDR-TB
34 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9;lineage9 | 2 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage3 | 1 |
| lineage1.2.1.2.1 | 2 |
| lineage2.1;lineage6.3 | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 7 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage2.1;lineage4.9 | 7 |
| lineage4.9 | 6 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| 7 | |
| M.canetti;lineage2.2 | 2 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La3;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 2 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.9;lineage6.3 | 3 |
| lineage2.1 | 3 |
| La1.2.BCG | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| La3;lineage2.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage3.1.2.2 | 1 |
| La3;lineage4.3.4 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| lineage3.1.2.1;lineage3.1.2.2 | 1 |
| La3;lineage2 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 71 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR4800341 | Other | lineage3 | None | SRR21659815 | Sensitive | lineage1.2.1.2.1 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | SRR29053584 | Sensitive | lineage1.2.1.2.1 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR212001 | HR-TB | None | ERR234659 | Other | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR6045526 | Other | lineage4.9 | None | ERR4815604 | Other | None | ERR161037 | Other | lineage4.9 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR3675236 | Other | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR4798262 | HR-TB | La1.2.BCG | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR3283042 | Other | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR161039 | HR-TB | La3;lineage4.3.4 | None | SRR1196546 | Other | lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR987722 | MDR-TB | None | SRR25827682 | Other | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.1;lineage3.1.2.2 | None | SRR18213713 | HR-TB | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None |
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