lineage | Count |
---|---|
82 | |
lineage4.3.3 | 1 |
lineage4 | 3 |
lineage3.1 | 1 |
lineage4.3.4.1 | 1 |
lineage4.5 | 1 |
lineage1.2.1.2.1 | 1 |
lineage2 | 2 |
lineage4.3.4 | 1 |
lineage4.9;La3 | 1 |
lineage4.1.1 | 1 |
lineage2.2.1 | 1 |
lineage4.3 | 1 |
lineage4.8 | 1 |
lineage2.2 | 3 |
lineage4.1.2 | 1 |
La1.8.1 | 1 |
La2 | 1 |
lineage4.9 | 1 |
lineage3.1.2 | 1 |
La1 | 1 |
lineage3 | 1 |
lineage4.6.1.1 | 1 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
lineage4.2.2.2 | 1 |
spoligotype | Count |
---|---|
None | 111 |
ID | Drug resistance | Lineage | Country iso2 | SRR1169306 | Other | None | SRR1169194 | Other | None | SRR1172951 | Other | None | SRR1172234 | Other | None | SRR1172310 | HR-TB | None | SRR1172728 | MDR-TB | None | SRR1172817 | HR-TB | None | SRR1173629 | Other | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173330 | Pre-XDR-TB | lineage4 | None | SRR1173384 | Other | lineage4 | None | SRR1173400 | Other | None | SRR1184294 | HR-TB | None | SRR1173778 | Other | None | SRR1174897 | HR-TB | None | SRR1173788 | Other | None | SRR1175074 | MDR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1184388 | Other | None | SRR1184380 | HR-TB | None | SRR15368973 | Other | None | SRR1196566 | HR-TB | None | SRR12416824 | HR-TB | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR1196546 | HR-TB | None | SRR12142341 | HR-TB | None | SRR19304036 | HR-TB | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19303884 | HR-TB | None | SRR21659815 | Sensitive | lineage1.2.1.2.1 | None | SRR20969677 | HR-TB | lineage2 | None | SRR25827682 | Other | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR26399973 | Other | lineage4.9;La3 | None | ERR176793 | Other | lineage4.1.1 | None | ERR4815604 | HR-TB | None | SRR3675465 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR181744 | HR-TB | None | SRR3675236 | HR-TB | None | SRR3675221 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | SRR3675311 | Other | None | ERR176643 | HR-TB | None | SRR3675456 | HR-TB | None | ERR176740 | HR-TB | None | ERR176751 | HR-TB | None | ERR212001 | HR-TB | None | ERR212033 | HR-TB | None | SRR3675555 | HR-TB | None | ERR4817735 | Other | lineage4.8 | None | SRR3675574 | HR-TB | None | ERR4816466 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR4816656 | HR-TB | None | ERR212123 | Other | None | ERR212121 | HR-TB | None | SRR3742665 | HR-TB | None | SRR4035759 | Sensitive | lineage4.1.2 | None | ERR4818021 | Other | La1.8.1 | None | ERR234659 | HR-TB | None | ERR4818615 | Other | None | SRR5341333 | HR-TB | None | SRR5341302 | HR-TB | None | SRR5341470 | HR-TB | None | SRR6045503 | HR-TB | None | SRR6045526 | HR-TB | None | SRR6045399 | Other | None | SRR6044790 | HR-TB | None | SRR6045233 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6046225 | HR-TB | None | ERR502524 | HR-TB | La2 | None | SRR6046540 | HR-TB | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | SRR7496517 | Other | None | ERR502532 | HR-TB | None | SRR7496509 | Other | None | ERR323053 | HR-TB | None | ERR323043 | HR-TB | None | ERR323039 | HR-TB | None | ERR3283013 | MDR-TB | lineage4 | None | ERR1035157 | Other | lineage4.9 | None | ERR3283036 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3797043 | HR-TB | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR387051 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797069 | Other | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4798262 | HR-TB | La1 | None | ERR4810741 | HR-TB | None | ERR4800341 | Other | lineage3 | None | ERR4811022 | HR-TB | None | ERR6358991 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR5336148 | Other | None | ERR4811105 | HR-TB | None | ERR736865 | HR-TB | None | ERR702404 | HR-TB | None | ERR702406 | HR-TB | None | ERR736867 | HR-TB | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR736874 | HR-TB | None | ERR9117709 | HR-TB | None | ERR987733 | RR-TB | lineage4.6.1.1 | None | ERR987722 | HR-TB | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | SRR023475 | MDR-TB | lineage4.2.2.2 | None |
---|