lineage | Count |
---|---|
128 | |
lineage4.9 | 8 |
lineage1.2.2.2 | 9 |
lineage4.3.4.2 | 38 |
lineage4 | 8 |
lineage4.1.2.1 | 6 |
La1 | 1 |
lineage3.1.2 | 1 |
lineage2.2.1 | 16 |
lineage4.3.4 | 2 |
lineage4.3.2 | 1 |
lineage4.1.1 | 1 |
La3 | 1 |
lineage4.3.4.1 | 1 |
lineage2 | 1 |
lineage2.2.1.1 | 1 |
lineage4.4.2 | 2 |
lineage2.2 | 2 |
lineage4.1 | 1 |
lineage3;lineage2.1 | 1 |
lineage1.1.2 | 2 |
lineage4.3 | 1 |
lineage3 | 6 |
lineage4.8 | 2 |
lineage3.1 | 2 |
La2 | 1 |
lineage4.7 | 1 |
spoligotype | Count |
---|---|
None | 244 |
ID | Drug resistance | Lineage | Country iso2 | ERR3797016 | HR-TB | None | ERR3797043 | HR-TB | None | ERR3797014 | Other | None | ERR3797017 | Other | None | ERR3797044 | Other | None | ERR3797036 | HR-TB | None | ERR3797083 | HR-TB | None | ERR3797061 | Other | None | ERR387051 | HR-TB | None | ERR3797086 | Other | lineage4.9 | None | ERR386923 | HR-TB | lineage1.2.2.2 | None | ERR4024759 | MDR-TB | lineage4.3.4.2 | None | ERR4024763 | MDR-TB | lineage4.3.4.2 | None | ERR403298 | HR-TB | lineage4 | None | ERR4188350 | HR-TB | None | ERR4178182 | MDR-TB | lineage4.3.4.2 | None | ERR4407460 | Sensitive | lineage4.1.2.1 | None | ERR4798406 | HR-TB | None | ERR4798262 | HR-TB | La1 | None | ERR4799025 | Pre-XDR-TB | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4811105 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4810741 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR4812356 | MDR-TB | lineage4.3.4.2 | pe | ERR4812064 | MDR-TB | lineage4.3.4.2 | None | ERR4811493 | HR-TB | None | ERR5987265 | MDR-TB | lineage2.2.1 | None | ERR6358991 | HR-TB | None | ERR6358837 | HR-TB | None | ERR6865735 | MDR-TB | lineage4.3.4.2 | None | ERR6359045 | HR-TB | None | ERR6865980 | MDR-TB | lineage4.3.4.2 | None | ERR736839 | Other | None | ERR6866134 | MDR-TB | lineage4.3.4.2 | None | ERR702404 | HR-TB | None | ERR6865978 | MDR-TB | lineage4.3.4.2 | None | ERR6866333 | MDR-TB | lineage4.3.4.2 | None | ERR6866863 | MDR-TB | lineage4.3.4.2 | None | ERR702406 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736835 | HR-TB | None | ERR736865 | HR-TB | None | ERR736867 | HR-TB | None | ERR751482 | MDR-TB | lineage4.3.4.2 | pe | ERR736874 | HR-TB | None | ERR775350 | MDR-TB | lineage4.3.4.2 | pe | ERR751565 | MDR-TB | lineage4.3.4.2 | pe | ERR751582 | MDR-TB | lineage4.3.4.2 | pe | ERR751666 | Sensitive | lineage2.2.1 | th | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR751549 | MDR-TB | lineage4.3.4.2 | pe | ERR752144 | Sensitive | lineage2.2.1 | th | ERR775342 | MDR-TB | lineage4.3.4.2 | pe | ERR779885 | MDR-TB | lineage4.3.4.2 | pe | ERR775351 | MDR-TB | lineage4.3.4.2 | pe | ERR845937 | MDR-TB | lineage4.3.4.2 | pe | ERR7910871 | MDR-TB | lineage4.3.4.2 | pe | ERR8976043 | HR-TB | None | ERR8773624 | Sensitive | lineage2.2.1 | None | ERR8773625 | Sensitive | lineage2.2.1 | None | ERR9786604 | Other | None | ERR9120073 | MDR-TB | lineage2.2.1 | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | SRR1169249 | Other | La3 | None | ERR987722 | HR-TB | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR1172728 | MDR-TB | None | SRR1172310 | HR-TB | None | SRR1173384 | Other | lineage4 | None | SRR1172817 | HR-TB | None | SRR1173400 | Other | None | SRR1173629 | Other | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173778 | Other | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR1174897 | HR-TB | None | SRR1184294 | HR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184380 | HR-TB | None | SRR1196494 | MDR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR12142341 | HR-TB | None | SRR12199394 | HR-TB | lineage2.2.1 | None | SRR12416824 | HR-TB | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1196566 | HR-TB | None | SRR13837590 | Sensitive | lineage4.9 | None | SRR15368820 | Sensitive | lineage4.4.2 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR14088352 | Pre-XDR-TB | lineage1.2.2.2 | None | SRR15368973 | Other | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR16370489 | MDR-TB | lineage4.3.4.2 | None | SRR19304036 | HR-TB | None | SRR21291131 | Sensitive | lineage4.4.2 | None | SRR2100370 | HR-TB | lineage1.2.2.2 | None | ERR11080973 | Sensitive | lineage2.2.1 | None | ERR158583 | HR-TB | None | ERR1035239 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR6325445 | HR-TB | None | SRR3675486 | HR-TB | None | ERR161033 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR4812752 | MDR-TB | lineage4.3.4.2 | pe | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR181744 | HR-TB | None | SRR3675234 | Other | None | SRR7898214 | HR-TB | lineage1.1.2 | in | ERR176643 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | SRR3675284 | HR-TB | lineage4.9 | None | ERR4813449 | MDR-TB | lineage4.3.4.2 | pe | SRR3675312 | HR-TB | lineage4 | None | ERR4813469 | MDR-TB | lineage4.3.4.2 | pe | ERR4813666 | MDR-TB | lineage4.3.4.2 | None | ERR4813630 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR4813554 | MDR-TB | lineage4.3.4.2 | None | SRR3675456 | HR-TB | None | SRR3675558 | HR-TB | None | SRR3675502 | Other | None | ERR212001 | HR-TB | None | SRR3675550 | Other | None | SRR3675555 | HR-TB | None | ERR176751 | HR-TB | None | ERR212034 | HR-TB | None | ERR212123 | Other | None | SRR3675574 | HR-TB | None | ERR212121 | HR-TB | None | SRR3742665 | HR-TB | None | SRR3675571 | HR-TB | None | ERR4816466 | HR-TB | None | ERR233384 | Sensitive | lineage3 | pt | ERR4816656 | HR-TB | None | ERR1035162 | Other | None | ERR2513082 | Other | lineage4.1.2.1 | gb | ERR4816769 | Sensitive | lineage2.2.1 | None | ERR2512474 | HR-TB | lineage1.1.2 | None | ERR234659 | HR-TB | None | ERR2512750 | Sensitive | lineage1.2.2.2 | gb | ERR4818929 | HR-TB | None | ERR2510196 | MDR-TB | lineage4.3.4.2 | pe | ERR2510170 | MDR-TB | lineage4.3.4.2 | pe | ERR2510217 | MDR-TB | lineage4.3.4.2 | pe | ERR2510202 | MDR-TB | lineage4.3.4.2 | pe | ERR1200638 | Sensitive | lineage3 | et | ERR2510224 | MDR-TB | lineage4.3.4.2 | pe | SRR5341418 | Other | None | ERR2515694 | Sensitive | lineage4.8 | za | SRR5341299 | Sensitive | lineage4 | None | SRR5217438 | Sensitive | lineage2.2.1 | None | ERR4819749 | Sensitive | lineage3 | None | SRR5341333 | HR-TB | None | ERR1200658 | Sensitive | lineage3 | et | SRR5341470 | HR-TB | None | ERR2693231 | Other | None | ERR4821053 | Other | lineage3 | None | ERR2693239 | HR-TB | None | ERR2693230 | Other | None | ERR2693254 | Other | None | SRR6045217 | Other | lineage4 | None | ERR2693257 | Other | None | SRR6045526 | HR-TB | None | ERR270674 | HR-TB | lineage1.2.2.2 | None | ERR4821410 | Other | lineage2.2.1 | gb | SRR6046152 | Other | lineage4.9 | None | SRR6046133 | HR-TB | None | SRR6044890 | Other | lineage4.9 | None | SRR6045952 | HR-TB | None | ERR278564 | HR-TB | lineage1.2.2.2 | None | SRR6045555 | HR-TB | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6046046 | Other | None | SRR6045327 | HR-TB | None | SRR6045399 | Other | None | SRR6046225 | HR-TB | None | ERR4829130 | Pre-XDR-TB | lineage1.2.2.2 | pk | SRR6325442 | HR-TB | None | ERR278594 | HR-TB | None | SRR6046397 | Other | None | SRR6046362 | HR-TB | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6046460 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046824 | HR-TB | None | ERR4830353 | Other | None | ERR4829756 | MDR-TB | lineage4.3.4.2 | it | SRR6325444 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6325447 | HR-TB | None | ERR323036 | HR-TB | None | SRR6511621 | HR-TB | None | ERR4831117 | HR-TB | None | SRR6797559 | Other | lineage1.2.2.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR323034 | HR-TB | lineage3.1 | None | SRR6832787 | RR-TB | lineage2.2.1 | None | SRR6855759 | Sensitive | lineage4.8 | None | ERR294248 | HR-TB | None | ERR294266 | HR-TB | None | ERR323039 | HR-TB | None | ERR5311099 | HR-TB | None | ERR5311081 | HR-TB | None | ERR323038 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR502532 | HR-TB | None | ERR5311090 | HR-TB | None | ERR502889 | Other | None | SRR8217918 | HR-TB | None | SRR7496509 | Other | None | SRR7496523 | Other | lineage4.7 | None | ERR323043 | HR-TB | None | ERR323041 | HR-TB | None | ERR1034652 | Other | None | ERR323063 | HR-TB | None | ERR067681 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR323055 | HR-TB | None | ERR323053 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR10465862 | Sensitive | lineage2.2.1 | None | ERR3287570 | MDR-TB | lineage4.3.4.2 | None | ERR11043240 | Sensitive | lineage3 | None | ERR133986 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3283024 | Other | None | ERR3287472 | MDR-TB | lineage4.3.4.2 | pe | ERR3287573 | MDR-TB | lineage4.3.4.2 | None | ERR11043200 | Sensitive | lineage4.1.2.1 | None | ERR117719 | HR-TB | lineage1.2.2.2 | None | ERR3283017 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3287572 | MDR-TB | lineage4.3.4.2 | None | ERR3468544 | HR-TB | None | ERR3439432 | Other | None |
---|