Rv0006 - c.-533C>T
Drug resistance types
25 Sensitive
1 RR-TB
21 HR-TB
14 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
28 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 42 |
| lineage4.3.2.1 | 1 |
| lineage4.9;lineage6.3 | 2 |
| M.canetti;lineage4.9 | 1 |
| La3;lineage4.9 | 1 |
| lineage4.8 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage4.8;lineage4.9 | 2 |
| lineage4.3.2;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La3 | 1 |
| 1 | |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage4.1.2 | 1 |
| La2;lineage4.9 | 1 |
| lineage2.2.1 | 1 |
| lineage4.9;lineage9 | 2 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| lineage4 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| lineage1.1.3.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.2 | 1 |
| lineage1.1.1 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage3.1.2.1;lineage3.1.2.2 | 1 |
| lineage4.3.3 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| lineage1.2.1.1 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage3.1.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 89 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Variant Proportion
Hover over a Country 0–0.1
0.1–0.2
0.2–0.3
0.3–0.4
0.4–0.5
0.5–0.6
0.6–0.8
0.8+
0.1–0.2
0.2–0.3
0.3–0.4
0.4–0.5
0.5–0.6
0.6–0.8
0.8+
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 |
|---|---|---|---|
| SRR5341461 | HR-TB | lineage4.9 | None |
| SRR9970981 | RR-TB | lineage4.3.2.1 | None |
| SRR6511621 | Sensitive | lineage4.9 | None |
| ERR212121 | HR-TB | lineage4.9;lineage6.3 | None |
| ERR751326 | Other | lineage4.9 | None |
| SRR6045399 | Other | M.canetti;lineage4.9 | None |
| ERR1035122 | Sensitive | lineage4.9 | None |
| SRR12416842 | HR-TB | lineage4.9 | None |
| ERR6866639 | Other | lineage4.9 | None |
| SRR28119827 | Other | La3;lineage4.9 | None |
| SRR9970979 | Sensitive | lineage4.8 | None |
| SRR5341308 | Sensitive | lineage4.9 | None |
| ERR176751 | Other | lineage4.9 | None |
| ERR323085 | Sensitive | lineage4.9 | None |
| SRR1183111 | HR-TB | lineage4.9 | None |
| SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None |
| ERR4024991 | Other | lineage4.8;lineage4.9 | None |
| ERR3797081 | Sensitive | lineage4.9 | None |
| SRR5341469 | HR-TB | lineage4.9 | None |
| SRR5341387 | Other | lineage4.9 | None |
| ERR6866022 | Other | lineage4.8;lineage4.9 | None |
| ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None |
| ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None |
| ERR4796254 | Sensitive | lineage4.9 | None |
| ERR323062 | Sensitive | lineage4.9 | None |
| SRR1158918 | Sensitive | lineage4.9 | None |
| ERR137286 | Other | lineage4.9 | None |
| ERR323066 | Sensitive | lineage4.9 | None |
| ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None |
| ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None |
| SRR27450479 | Other | La3 | None |
| ERR1063896 | Sensitive | None | |
| SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None |
| ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None |
| ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None |
| SRR9970980 | HR-TB | lineage4.1.2 | None |
| ERR323039 | HR-TB | La2;lineage4.9 | None |
| ERR4831616 | MDR-TB | lineage2.2.1 | None |
| ERR124636 | Sensitive | lineage4.9 | None |
| SRR5341470 | MDR-TB | lineage4.9;lineage9 | None |
| SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None |
| ERR3273109 | HR-TB | lineage4 | None |
| ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None |
| ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None |
| SRR5341303 | Sensitive | lineage4.9 | None |
| SRR5341453 | Other | lineage4.9 | None |
| ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None |
| ERR8479578 | Sensitive | lineage1.1.3.1 | None |
| ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None |
| SRR29096150 | Other | lineage4.9 | None |
| SRR29097026 | Other | lineage4.9 | None |
| SRR5341467 | Other | lineage4.9 | None |
| ERR176740 | Other | lineage4.9 | None |
| ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None |
| ERR779852 | Sensitive | lineage4.9 | None |
| ERR736834 | Sensitive | lineage4.9 | None |
| SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None |
| SRR6045892 | Sensitive | lineage4.9 | None |
| ERR403298 | MDR-TB | M.canetti;lineage4.2 | None |
| SRR5341299 | HR-TB | lineage4.9 | None |
| ERR4797264 | Sensitive | lineage4.9 | None |
| SRR14066533 | Sensitive | lineage1.1.1 | None |
| SRR26159047 | Other | lineage4.6.3;lineage4.9 | None |
| SRR1180226 | HR-TB | lineage4.9 | None |
| SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None |
| ERR502524 | HR-TB | lineage4.9;lineage6.3 | None |
| SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None |
| SRR1172310 | HR-TB | lineage4.9 | None |
| ERR736872 | HR-TB | lineage4.9 | None |
| ERR987729 | HR-TB | lineage3.1.2.1;lineage3.1.2.2 | None |
| SRR9971041 | MDR-TB | lineage4.3.3 | None |
| SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None |
| ERR502511 | Sensitive | lineage4.9 | None |
| SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None |
| ERR702405 | Sensitive | lineage4.9 | None |
| ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None |
| ERR13285068 | Sensitive | lineage4.9 | None |
| ERR323107 | Sensitive | lineage4.9 | None |
| SRR5341300 | HR-TB | lineage4.9 | None |
| ERR369161 | Sensitive | lineage4.9 | None |
| ERR4798099 | Other | lineage4.9 | None |
| ERR4814734 | Other | lineage1.2.1.1 | None |
| SRR5341384 | HR-TB | lineage4.9 | None |
| ERR502510 | Sensitive | lineage4.9 | None |
| SRR1174897 | MDR-TB | lineage4.9;lineage9 | None |
| SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None |
| SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None |
| ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None |
| ERR4798648 | MDR-TB | lineage3.1.2.2 | None |
