Rv0639 - c.-176C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
4 Sensitive
4 RR-TB
23 HR-TB
7 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
41 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 15 |
| M.canetti;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 9 |
| 17 | |
| lineage4.9;lineage6.3 | 4 |
| lineage2.2.1 | 3 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.4.1.1 | 6 |
| lineage4.1.1.1 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
| lineage4.1.2.1 | 1 |
| lineage4.6.2.2 | 2 |
| lineage2.1 | 2 |
| La3 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1;lineage4.4.1.1 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage1.1.2 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 3 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 81 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6045526 | Other | lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | SRR6789626 | Other | None | ERR4810741 | HR-TB | None | ERR4811075 | Other | None | SRR1196546 | Other | lineage4.9 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR9117721 | HR-TB | None | SRR1180172 | Other | lineage2.2.1 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR1196566 | Other | lineage4.9 | None | SRR1196583 | Other | lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | SRR9738558 | RR-TB | lineage4.4.1.1 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR4816999 | Other | None | ERR4811105 | HR-TB | None | ERR4811142 | RR-TB | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4811311 | Other | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR29273802 | RR-TB | lineage4.4.1.1 | None | SRR3675236 | Other | None | SRR12142341 | HR-TB | lineage2.2.1 | None | SRR1165699 | Other | lineage4.9 | None | ERR13262258 | Sensitive | lineage4.4.1.1 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR4817731 | HR-TB | lineage4.9 | None | SRR20969677 | HR-TB | lineage2.1 | None | ERR702406 | Other | lineage2.1 | None | SRR1172817 | Other | La3 | None | ERR176751 | Other | lineage4.9 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR28119752 | Other | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | ERR987722 | MDR-TB | None | SRR25827682 | Other | None | ERR4814352 | Other | lineage2.2.1 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR29096410 | Other | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR18213713 | HR-TB | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR29273791 | Pre-XDR-TB | lineage2.2.1;lineage4.4.1.1 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR12416824 | HR-TB | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4818513 | Sensitive | lineage4.4.1.1 | None | SRR1184381 | MDR-TB | None | ERR234659 | Other | None | ERR4828856 | Sensitive | lineage4.4.1.1 | None | ERR4829060 | Sensitive | lineage4.4.1.1 | it | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR4407463 | HR-TB | None | SRR1173778 | Other | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1196494 | MDR-TB | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None |
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