Rv0006 - c.1407G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
17 Sensitive
1 RR-TB
14 HR-TB
8 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
65 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.1;lineage4.9 | 7 |
| La1.7;lineage4.9 | 5 |
| lineage2.1;lineage4.9;lineage6.3 | 5 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.9 | 29 |
| lineage4.8 | 10 |
| lineage4.1.3 | 2 |
| lineage3 | 1 |
| 13 | |
| lineage4.9;lineage6.3 | 3 |
| La1.7.1;lineage4.9 | 1 |
| lineage2.1 | 1 |
| lineage2.1;lineage6.3 | 2 |
| M.canetti;lineage4.9 | 2 |
| lineage4.8.1 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.1.2.1 | 5 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage1;lineage4.9 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4.6.1 | 1 |
| lineage2.2.1 | 2 |
| lineage4.1.1.1 | 1 |
| lineage4 | 1 |
| lineage6.3.1 | 1 |
| lineage6 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La1.7 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 105 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR926162 | Sensitive | lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4799025 | Other | lineage4.8 | None | ERR926160 | Sensitive | lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | SRR28239866 | Sensitive | lineage4.8 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4797588 | MDR-TB | lineage3 | None | SRR28239861 | Sensitive | lineage4.8 | None | SRR3675236 | Other | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR926163 | Other | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | SRR18714899 | Other | lineage4.8 | None | ERR926164 | Other | lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR7496509 | Other | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR12708389 | MDR-TB | lineage4.8.1 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | SRR7496472 | Other | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | ERR9786843 | Other | None | ERR9787197 | Other | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR18715047 | Sensitive | lineage4.8 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR3675572 | Other | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR3675275 | Other | lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | SRR18213713 | HR-TB | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR7496517 | Other | None | SRR23862179 | Sensitive | lineage4.8 | None | SRR23861941 | Sensitive | lineage4.8 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR4800341 | Other | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR6358755 | Other | lineage4.6.1 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4811311 | Other | None | ERR4815752 | Other | lineage4.9 | None | ERR9786617 | Other | lineage4.1.1.1 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786525 | Other | lineage4 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR12416824 | HR-TB | None | ERR176779 | HR-TB | lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR9787165 | Other | lineage6 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR9117709 | Other | None | SRR3675441 | Other | lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR5866102 | MDR-TB | lineage4.8 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR3675221 | Other | lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR9786671 | Other | None | ERR176778 | HR-TB | lineage4.9 | None | ERR9786604 | Other | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR5866101 | MDR-TB | lineage4.8 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | SRR3675222 | Other | La1.7 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None |
|---|
