Rv0001 - c.996A>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
11 Sensitive
2 RR-TB
32 HR-TB
12 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
66 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage4.9 | 33 |
| lineage4.3.4 | 2 |
| 13 | |
| lineage4.1.3 | 2 |
| lineage3.1.2.2 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage6.3.1 | 1 |
| lineage4 | 2 |
| La1.7.1;lineage4.9 | 1 |
| lineage4.4.1.1 | 1 |
| lineage2.2.1 | 6 |
| La1;lineage4.9 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.1.2.1 | 3 |
| lineage4.9;lineage6.3 | 4 |
| lineage2.1;lineage4.9 | 8 |
| La3;lineage4.9 | 4 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La2;lineage4.9 | 2 |
| M.canetti;lineage4.9 | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage1;lineage4.9 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage4.6.1 | 1 |
| lineage1.2.2.2 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.1.1.1 | 2 |
| lineage4.8.1 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage2.2.1.2 | 1 |
| lineage3 | 3 |
| lineage4.8 | 2 |
| lineage4.9;lineage9 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.2.1 | 1 |
| lineage6 | 1 |
| lineage1.1.3.1 | 1 |
| lineage2.1;lineage6.3 | 2 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.2;lineage4.9 | 1 |
| La2;lineage2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 124 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | SRR29097058 | Other | lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR4816999 | Other | None | SRR29050859 | Other | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR3283044 | Other | lineage4 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4816585 | Other | lineage2.2.1 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR3675221 | Other | lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR9786604 | Other | None | ERR2693252 | Sensitive | lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR18213713 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6046066 | Other | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR6358991 | HR-TB | None | ERR6358755 | Other | lineage4.6.1 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR9117709 | Other | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | ERR473332 | Other | lineage4.9 | None | SRR7496509 | Other | None | ERR176751 | Other | lineage4.9 | None | SRR12708389 | MDR-TB | lineage4.8.1 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR28119752 | Other | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | ERR987722 | MDR-TB | None | ERR181824 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | SRR3675572 | Other | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR3797069 | Other | lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | SRR7496517 | Other | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR13285068 | Sensitive | lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | SRR29097004 | Other | lineage3 | None | ERR12015083 | Other | lineage4.8 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | SRR16156817 | Other | lineage4.9 | None | SRR6789626 | Other | None | ERR4810624 | HR-TB | lineage2.2.1 | None | SRR18500604 | Sensitive | lineage2.2.1 | None | ERR4798504 | RR-TB | lineage3 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR3675236 | Other | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR29017461 | Other | La3;lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | ERR4817893 | Other | lineage4.8 | None | ERR9787165 | Other | lineage6 | None | ERR4816466 | HR-TB | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR7496472 | Other | lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | ERR9787197 | Other | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR9786671 | Other | None | SRR19295647 | Sensitive | lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None |
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