Rv0001 - c.903C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
39 Sensitive
1 RR-TB
19 HR-TB
8 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
17 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 41 |
| lineage2.2.1 | 5 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.4.1.1 | 1 |
| La1.7;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| La1.8.1 | 1 |
| lineage4.7 | 1 |
| lineage1;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage4.1.2.1;lineage4.3.2 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage4.3 | 1 |
| lineage4.2.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| 2 | |
| lineage4.1.2.1 | 5 |
| lineage4.3.3 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage4.9;lineage6.3 | 1 |
| lineage4.5 | 1 |
| lineage2.2.1;lineage4 | 1 |
| La2;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage3 | 2 |
| lineage4.9;lineage9 | 1 |
| lineage4.4.1.2 | 1 |
| lineage3.1.2.2 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage1.1.1;lineage4 | 1 |
| lineage5.1.4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 85 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4811030 | Sensitive | lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR6044875 | Sensitive | lineage4.9 | None | ERR369151 | Other | lineage4.9 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR3675279 | Sensitive | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | SRR29097058 | Other | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR7240033 | Other | La1.8.1 | None | SRR5341456 | Other | lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR1465912 | Sensitive | lineage4.7 | ch | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675580 | Sensitive | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR16915777 | Sensitive | lineage4.1.2.1;lineage4.3.2 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR736848 | Other | lineage4.9 | None | SRR1175508 | Sensitive | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | ERR867542 | HR-TB | lineage4.3 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | SRR6046564 | Sensitive | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR12708416 | Sensitive | None | ERR4811692 | Sensitive | lineage4.1.2.1 | pe | SRR12708419 | Other | lineage4.3.3 | None | ERR4812076 | Sensitive | lineage4.1.2.1 | None | ERR987722 | MDR-TB | None | ERR751517 | Sensitive | lineage4.1.2.1 | pe | ERR4812623 | Sensitive | lineage4.1.2.1 | pe | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR3675522 | Other | lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR29097004 | Other | lineage3 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR400345 | Other | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR11662694 | Other | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR4798504 | RR-TB | lineage3 | None | ERR1063846 | HR-TB | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR12708372 | Sensitive | lineage4.9 | None | SRR16915778 | Sensitive | lineage4.1.2.1 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None |
|---|
