Rv2245 - c.579C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
14 Sensitive
2 RR-TB
26 HR-TB
12 MDR-TB
3 Pre-XDR-TB
1 XDR-TB
101 Other
lineage Counts
| lineage | Count |
|---|---|
| 12 | |
| lineage4.9 | 50 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 10 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 5 |
| La1.7;lineage4.9 | 3 |
| lineage2.2.1.2 | 2 |
| La3;lineage2.1;lineage4.9 | 2 |
| La2;lineage2.2 | 1 |
| La3;lineage4.9 | 4 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| La2;lineage4.9 | 2 |
| lineage4.9;lineage7 | 4 |
| lineage4.3.4.2.1 | 2 |
| M.canetti;lineage4.9 | 3 |
| lineage2.2.1 | 9 |
| lineage6.1.1 | 2 |
| lineage4.1.3 | 2 |
| lineage4.6.1 | 1 |
| lineage4.5 | 1 |
| lineage4.1.1.1 | 2 |
| lineage4.1 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage3 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage2.1 | 1 |
| lineage2.1;lineage6.3 | 2 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La1;lineage4.9 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage4 | 3 |
| lineage4.8 | 4 |
| lineage3.1.2.2 | 1 |
| lineage4.1.2.1 | 5 |
| lineage6.3.1 | 1 |
| lineage3.1.2.1 | 1 |
| lineage1.1.2 | 1 |
| lineage4.4.1.1 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage4.9;lineage6.3 | 5 |
| lineage4.3.4.2 | 1 |
| lineage4.9;lineage9 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| La1.2.BCG | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 159 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR25827682 | Other | None | ERR212001 | HR-TB | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR3675457 | Other | lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4815604 | Other | None | SRR3675214 | Other | lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR3797069 | Other | lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR11466146 | Other | lineage4.3.4.2.1 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | SRR29016901 | Other | La3;lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | ERR13266684 | Pre-XDR-TB | lineage2.2.1 | None | ERR4816999 | Other | None | ERR3799304 | Other | lineage6.1.1 | None | SRR29051077 | Other | lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4769457 | Other | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR6358755 | Other | lineage4.6.1 | None | ERR752229 | Other | lineage4.5 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR9786617 | Other | lineage4.1.1.1 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9786440 | Other | lineage4.1 | None | SRR29051093 | Other | lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR17832802 | HR-TB | lineage3 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR4816585 | Other | lineage2.2.1 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR29055629 | MDR-TB | lineage2.2.1 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR176751 | Other | lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR6046253 | Sensitive | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR987722 | MDR-TB | None | ERR212033 | Other | lineage4.9 | None | ERR9787197 | Other | None | ERR4769497 | Other | La1;lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR18213713 | HR-TB | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | SRR6046046 | Other | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR12015083 | Other | lineage4.8 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR11049020 | Other | lineage4.8 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR26399490 | Sensitive | lineage4.9 | None | ERR4800341 | Other | None | SRR26159043 | Other | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR12416824 | HR-TB | None | ERR3283044 | Other | lineage4 | None | SRR7535086 | Other | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | SRR28119752 | Other | lineage4.9 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | SRR29097037 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR926156 | Sensitive | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR6866807 | Other | lineage4.9 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR387051 | Other | lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR176549 | Other | lineage4.3.4.2 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | SRR6789626 | Other | None | ERR2027263 | Other | lineage4 | None | SRR6046593 | Other | lineage4.9 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR9786694 | Other | lineage4.1.2.1 | None | SRR3675236 | Other | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR926163 | Other | lineage4.9 | None | SRR29017461 | Other | La3;lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR4817893 | Other | lineage4.8 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | ERR926164 | Other | lineage4.9 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR1915487 | Other | La1.2.BCG | None |
|---|
