lineage | Count |
---|---|
lineage4.9 | 15 |
77 | |
lineage2.2.1;lineage1.1 | 1 |
lineage3 | 2 |
lineage4.5 | 2 |
lineage7;lineage2.2.1.2 | 1 |
lineage4.9;La3 | 1 |
La3 | 1 |
lineage2.2.1 | 6 |
lineage1.1.2 | 1 |
lineage4.8 | 3 |
lineage4.1.1 | 2 |
lineage3;lineage2.2.1 | 1 |
lineage4.3.4.2.1 | 3 |
lineage4.1.2.1 | 6 |
lineage4.3 | 1 |
lineage4 | 9 |
lineage2.2 | 2 |
lineage4.4.1.1 | 1 |
lineage4.8;La3 | 2 |
lineage4.1 | 2 |
lineage4.2.1 | 1 |
lineage4.1;lineage1 | 1 |
La1.8.1 | 2 |
La2 | 1 |
lineage6.1.1 | 2 |
lineage4.1.3 | 2 |
La1.2 | 1 |
lineage2 | 1 |
lineage3.1.2 | 1 |
lineage4.6.1.1 | 1 |
lineage4.3.2 | 1 |
lineage6.3.1 | 1 |
lineage6 | 1 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
spoligotype | Count |
---|---|
None | 156 |
ID | Drug resistance | Lineage | Country iso2 | SRR26159043 | Other | lineage4.9 | None | SRR1169306 | Other | None | SRR1172234 | Other | None | SRR1172310 | HR-TB | None | SRR1180225 | Pre-XDR-TB | lineage2.2.1;lineage1.1 | None | SRR12416824 | HR-TB | None | SRR17832802 | HR-TB | lineage3 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR19303884 | HR-TB | None | SRR26399490 | Sensitive | lineage4.9 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR1169194 | Other | None | SRR1169249 | Other | La3 | None | SRR1174897 | HR-TB | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | SRR25827682 | Other | None | ERR11081258 | Other | lineage4.8 | None | ERR176793 | Other | lineage4.1.1 | None | ERR4815604 | HR-TB | None | SRR25827497 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | SRR3675488 | HR-TB | None | SRR3675465 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3675501 | HR-TB | None | SRR3675221 | HR-TB | None | SRR3675222 | Other | None | SRR3675236 | HR-TB | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675270 | HR-TB | None | ERR176740 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675284 | HR-TB | lineage4.9 | None | ERR176643 | HR-TB | None | SRR3675311 | Other | None | ERR212001 | HR-TB | None | SRR3675456 | HR-TB | None | ERR176751 | HR-TB | None | ERR4816999 | Other | None | ERR2027263 | Other | lineage4 | None | SRR3675572 | Other | None | SRR3675555 | HR-TB | None | ERR212033 | HR-TB | None | ERR4817060 | RR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR7496472 | Other | None | ERR4817893 | Other | lineage4.8;La3 | None | SRR5341432 | HR-TB | lineage4 | None | ERR2446566 | Other | lineage4.1 | None | ERR2512770 | Other | lineage4.2.1 | None | SRR5341373 | HR-TB | lineage4 | None | ERR4819068 | Sensitive | lineage4.1;lineage1 | None | ERR4818021 | Other | La1.8.1 | None | SRR5341456 | Other | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341302 | HR-TB | None | SRR5341315 | Sensitive | None | SRR5341313 | HR-TB | None | SRR5341333 | HR-TB | None | SRR6044835 | Sensitive | lineage4 | None | SRR5341470 | HR-TB | None | SRR5431730 | Other | La1.8.1 | None | SRR6045519 | HR-TB | None | SRR5535933 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None | SRR6044790 | HR-TB | None | SRR6046046 | Other | None | SRR6044855 | Other | lineage4.9 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045010 | Other | lineage4 | None | SRR6044925 | Sensitive | lineage4.9 | None | SRR6045053 | Other | None | SRR6045327 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6046253 | HR-TB | lineage4.9 | None | ERR4830353 | Other | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6046299 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6046540 | HR-TB | None | ERR4831117 | HR-TB | None | SRR8217918 | HR-TB | None | ERR11466146 | Other | lineage4.3.4.2.1 | None | ERR502524 | HR-TB | La2 | None | ERR502532 | HR-TB | None | SRR6789626 | Other | None | SRR7585435 | Other | lineage4.9 | None | SRR7535086 | Other | None | SRR7496509 | Other | None | SRR7496517 | Other | None | ERR323039 | HR-TB | None | ERR3283013 | MDR-TB | lineage4 | None | ERR323043 | HR-TB | None | ERR323053 | HR-TB | None | ERR3283008 | Other | lineage4.9 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063857 | HR-TB | None | ERR11049020 | Other | lineage4.8 | None | ERR3283043 | Other | lineage4.9 | None | ERR3283027 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3283051 | Other | lineage4.9 | None | ERR3283055 | HR-TB | None | ERR3445504 | HR-TB | None | ERR3799304 | Other | lineage6.1.1 | None | ERR3797069 | Other | None | ERR4188247 | HR-TB | None | ERR387051 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4769457 | Other | lineage4.9 | None | ERR4407463 | HR-TB | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4769452 | HR-TB | None | ERR4769521 | HR-TB | None | ERR4769450 | HR-TB | None | ERR4769497 | HR-TB | La1.2 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR12015083 | Other | lineage4.8;La3 | None | ERR4800341 | Other | lineage3 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR4811493 | HR-TB | None | ERR5336148 | Other | None | ERR736839 | Other | None | ERR6866807 | HR-TB | lineage4 | None | ERR702406 | HR-TB | None | ERR752229 | Other | lineage4.5 | None | ERR736848 | HR-TB | None | ERR736874 | HR-TB | None | ERR736865 | HR-TB | None | ERR736867 | HR-TB | None | ERR9117805 | Other | lineage4.3.2 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR9786515 | Other | lineage4.1.2.1 | None | ERR9786440 | Other | lineage4.1 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9787165 | Other | lineage6 | None | ERR9787197 | Other | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR987722 | HR-TB | None |
---|