Rv3596c - c.1392C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
34 Sensitive
1 RR-TB
32 HR-TB
9 MDR-TB
1 Pre-XDR-TB
2 XDR-TB
41 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 59 |
| lineage2.2.1 | 4 |
| M.canetti;lineage4.9 | 2 |
| La2;lineage4.9;lineage9 | 1 |
| lineage3.1.2.1 | 2 |
| lineage3 | 1 |
| lineage2.2.1.2 | 1 |
| lineage4.2;lineage4.9 | 2 |
| La1.7;M.canetti;lineage4.9 | 4 |
| La3;lineage4.9 | 2 |
| lineage4.3.2;lineage4.9 | 1 |
| M.canetti;lineage2.2 | 2 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| La1.7;lineage4.9 | 3 |
| lineage4 | 2 |
| lineage1.2.1.1 | 1 |
| lineage4.9;lineage9 | 2 |
| lineage4.3.4 | 1 |
| lineage3.1.2.2 | 1 |
| La1.7.1 | 1 |
| La1;lineage4.9 | 2 |
| 2 | |
| lineage3.1.2.1;lineage4 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| La2;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage4.8 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.1.2.1 | 2 |
| lineage1.1.1 | 2 |
| lineage1.1.3.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage4.1.2 | 1 |
| lineage2.2 | 1 |
| lineage4.9;lineage6.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| La1.8.1 | 1 |
| lineage6.1.1 | 2 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 120 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR926163 | Other | lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | SRR17832802 | HR-TB | lineage3 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR11252612 | Other | La3;lineage4.9 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR6046210 | Other | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | SRR6046046 | Other | lineage4.9 | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR926160 | Sensitive | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR2660539 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR1063846 | HR-TB | lineage4.9 | None | SRR10808399 | Sensitive | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR29096179 | Sensitive | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR987722 | MDR-TB | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR28351455 | Other | lineage3.1.2.1;lineage4 | None | SRR29096410 | Other | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR6866410 | Sensitive | lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR736848 | Other | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR161037 | Other | lineage4.9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | ERR926164 | Other | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675441 | Other | lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR29097026 | Other | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR21690362 | Other | lineage1.1.1 | None | ERR2693252 | Sensitive | lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR4796577 | HR-TB | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR926162 | Sensitive | lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | SRR29096943 | Sensitive | lineage3.1.2.1 | None | ERR3797019 | Other | La1.8.1 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | SRR7496471 | Sensitive | lineage4 | None | ERR9787014 | Other | lineage6.1.1 | None | SRR6044876 | Sensitive | lineage4.9 | None |
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