Rv3696c - c.624A>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
20 Sensitive
2 RR-TB
26 HR-TB
25 MDR-TB
6 Pre-XDR-TB
0 XDR-TB
38 Other
lineage Counts
| lineage | Count |
|---|---|
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9 | 7 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage4.3.3 | 1 |
| lineage4.3.4.2 | 45 |
| lineage4.1.1.1 | 1 |
| 14 | |
| lineage3.1.2.2 | 1 |
| lineage4.8 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.9 | 17 |
| lineage2.2.1 | 5 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage6.3 | 5 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| La2;lineage4.9 | 1 |
| lineage4.9;lineage9 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La1.7;lineage4.9;lineage7 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4 | 1 |
| La3 | 1 |
| lineage2.1 | 1 |
| lineage4.1.2.1;lineage4.3.4.2 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 117 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | ERR4024557 | Sensitive | lineage4.3.4.2 | None | SRR29126566 | Sensitive | lineage4.3.4.2 | None | SRR28394059 | MDR-TB | lineage4.3.4.2 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR4811105 | HR-TB | None | ERR4811075 | Other | None | ERR6865508 | HR-TB | lineage4.3.4.2 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR4810741 | HR-TB | None | ERR13260282 | MDR-TB | lineage4.3.4.2 | None | ERR12268362 | Sensitive | lineage4.3.4.2 | None | SRR12416824 | HR-TB | None | ERR4817893 | Other | lineage4.8 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | ERR4816656 | Other | lineage4.9 | None | SRR1173400 | Other | lineage4.9 | None | SRR29096150 | Other | lineage4.9 | None | SRR28393268 | MDR-TB | lineage4.3.4.2 | None | SRR1184294 | Other | lineage4.9 | None | ERR3287474 | HR-TB | lineage4.3.4.2 | pe | SRR19276601 | Sensitive | lineage4.3.4.2 | None | ERR987722 | MDR-TB | None | SRR28394088 | Sensitive | lineage4.3.4.2 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR13260614 | MDR-TB | lineage4.3.4.2 | None | ERR1034718 | Sensitive | lineage4.3.4.2 | pe | SRR28394185 | MDR-TB | lineage4.3.4.2 | None | ERR4819241 | Other | lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | ERR2516731 | MDR-TB | lineage4.3.4.2 | pe | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR4813122 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR4024625 | Sensitive | lineage4.3.4.2 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR6865789 | Sensitive | lineage4.3.4.2 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | SRR29124314 | Other | lineage4.3.4.2 | None | ERR4815441 | HR-TB | lineage4.9 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | ERR9117721 | HR-TB | None | ERR4025085 | Sensitive | lineage4.3.4.2 | None | ERR6865917 | Sensitive | lineage4.3.4.2 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4816585 | Other | lineage2.2.1 | None | ERR9117709 | Other | None | ERR13260291 | MDR-TB | lineage4.3.4.2 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR13261584 | MDR-TB | lineage4.3.4.2 | None | ERR4812016 | Sensitive | lineage4.3.4.2 | pe | ERR6865710 | Sensitive | lineage4.3.4.2 | None | SRR25827682 | Other | None | ERR751476 | MDR-TB | lineage4.3.4.2 | pe | SRR28119805 | Other | lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR2516497 | MDR-TB | lineage4.3.4.2 | pe | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR4820773 | HR-TB | lineage4.9 | None | SRR28394035 | MDR-TB | lineage4.3.4.2 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR4811142 | RR-TB | None | SRR28119753 | Other | lineage4.9 | None | ERR4811311 | Other | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR7535086 | Other | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR1172728 | RR-TB | La3 | None | ERR6866838 | Sensitive | lineage4.3.4.2 | None | ERR702406 | Other | lineage2.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR28119811 | Other | lineage2.2.1 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR4812732 | Sensitive | lineage4.3.4.2 | pe | ERR13260619 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR3287851 | MDR-TB | lineage4.3.4.2 | pe | ERR3287432 | Pre-XDR-TB | lineage4.3.4.2 | pe | SRR28393868 | HR-TB | lineage4.1.2.1;lineage4.3.4.2 | None | SRR1184381 | MDR-TB | None | ERR3287456 | MDR-TB | lineage4.3.4.2 | pe | ERR3287693 | MDR-TB | lineage4.3.4.2 | pe | ERR3287800 | MDR-TB | lineage4.3.4.2 | pe | ERR3287847 | MDR-TB | lineage4.3.4.2 | pe | ERR7910994 | MDR-TB | lineage4.3.4.2 | pe | ERR234659 | Other | None | ERR4024984 | HR-TB | lineage4.3.4.2 | None | ERR4025094 | Sensitive | lineage4.3.4.2 | None | ERR4829055 | Sensitive | lineage4.3.4.2 | it | ERR6879020 | Sensitive | lineage4.3.4.2 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR1184372 | MDR-TB | None | ERR2516491 | Pre-XDR-TB | lineage4.3.4.2 | pe | SRR19276617 | Sensitive | lineage4.3.4.2 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR6865546 | Sensitive | lineage4.3.4.2 | None | SRR1173778 | Other | lineage4.9 | None | SRR28394236 | MDR-TB | lineage4.3.4.2 | None |
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