Rv3596c - c.117T>C
Drug resistance types
73 Sensitive
9 RR-TB
160 HR-TB
15 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
104 Other
lineage Counts
| lineage | Count |
|---|---|
| 165 | |
| lineage4.1.3 | 2 |
| lineage4.6.2.2 | 1 |
| lineage2.2.1 | 19 |
| lineage6.1.1 | 2 |
| lineage4.1.2.1 | 3 |
| lineage6 | 1 |
| lineage6.3.1 | 1 |
| lineage4 | 68 |
| lineage4.8 | 3 |
| lineage4.9 | 47 |
| lineage2.2.1.2 | 2 |
| lineage4.9;lineage2.2 | 1 |
| lineage3 | 3 |
| La1.8.1 | 1 |
| lineage1.1.2 | 2 |
| La1.7.1 | 1 |
| lineage4.5 | 2 |
| lineage7;lineage2.2.1.2 | 1 |
| lineage2.2 | 6 |
| lineage2 | 1 |
| lineage4.9;lineage4.6.3 | 1 |
| lineage4.9;La3 | 1 |
| lineage6.3;lineage4.9;lineage2.1 | 1 |
| lineage6.3;lineage2.2.1 | 1 |
| lineage4.1 | 2 |
| lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
| lineage4.3.4 | 2 |
| lineage2.1 | 1 |
| lineage4.1.1 | 1 |
| lineage4.1.1.2 | 1 |
| lineage1.1.1 | 1 |
| lineage4.9;lineage2.1 | 1 |
| lineage4.2.1 | 2 |
| lineage2.2.1.1 | 1 |
| La2 | 1 |
| lineage4.7 | 1 |
| lineage4.1.2 | 2 |
| lineage4.3.2.1 | 1 |
| lineage4.4.2 | 1 |
| La1 | 2 |
| La1.3 | 3 |
| La1.2 | 1 |
| lineage4.9;La1.3 | 1 |
| lineage3.1.2 | 1 |
| lineage4.6.5 | 2 |
| lineage1.1.3.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 366 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR9634265 | Sensitive | None | ERR9786671 | Other | None | ERR9786604 | Other | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR10315567 | Other | lineage2.2.1 | None | ERR9786843 | Other | None | ERR9787014 | Other | lineage6.1.1 | None | ERR987722 | HR-TB | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR10808399 | Sensitive | lineage4 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR10808805 | Sensitive | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR1172310 | HR-TB | None | SRR10809074 | Sensitive | lineage4 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1173568 | Other | lineage4.9 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1174897 | HR-TB | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR12142341 | HR-TB | None | SRR14782405 | HR-TB | None | SRR13861439 | RR-TB | lineage4.9 | None | SRR12416824 | HR-TB | None | SRR15368973 | Other | None | SRR14801749 | Sensitive | None | SRR17832802 | HR-TB | lineage3 | None | SRR1640750 | HR-TB | None | SRR1791747 | Other | La1.8.1 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR19304036 | HR-TB | None | SRR20632814 | Sensitive | lineage4 | None | SRR20969677 | HR-TB | lineage2 | None | SRR19303884 | HR-TB | None | SRR20969731 | Other | lineage2.2.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR20970016 | Other | lineage2.2 | None | SRR25827682 | Other | None | SRR8692898 | Other | lineage4.9 | None | SRR8692790 | RR-TB | lineage4 | None | SRR8692782 | Other | lineage4.9 | None | SRR8692887 | Other | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | SRR26159043 | Other | lineage4.9 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | ERR176779 | HR-TB | None | ERR176778 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | SRR3675465 | HR-TB | None | SRR3675482 | HR-TB | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR161033 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3675486 | HR-TB | None | SRR3675488 | HR-TB | None | SRR3675221 | HR-TB | None | ERR181744 | HR-TB | None | SRR3675222 | Other | None | ERR4815471 | Other | lineage4.9 | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675236 | HR-TB | None | SRR3675234 | Other | None | ERR702405 | Sensitive | lineage2.1 | None | SRR3675265 | Other | lineage4 | None | ERR176651 | HR-TB | None | SRR3675292 | Sensitive | lineage4 | None | SRR3675311 | Other | None | SRR3675270 | HR-TB | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675284 | HR-TB | lineage4.9 | None | SRR3675501 | HR-TB | None | SRR3675312 | HR-TB | lineage4 | None | ERR181887 | HR-TB | None | ERR4816964 | Other | lineage4.9 | None | SRR3675456 | HR-TB | None | ERR4816113 | Sensitive | lineage4.1.1 | None | SRR3675510 | Other | None | SRR3675545 | HR-TB | None | ERR2027263 | Other | lineage4 | None | ERR212034 | HR-TB | None | ERR212001 | HR-TB | None | SRR3675574 | HR-TB | None | SRR3675555 | HR-TB | None | SRR3675558 | HR-TB | None | ERR212123 | Other | None | ERR212125 | HR-TB | lineage4 | None | ERR4816470 | Other | lineage3 | None | SRR3675571 | HR-TB | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4816466 | HR-TB | None | ERR4816656 | HR-TB | None | ERR4818536 | Other | lineage4.9 | None | ERR4818929 | HR-TB | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR4819357 | Other | lineage4.9 | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341387 | Other | lineage4 | None | ERR4819314 | Other | lineage1.1.1 | None | SRR5341425 | Other | lineage4 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | ERR4819933 | Other | lineage4.9 | None | SRR5341330 | HR-TB | None | ERR4819462 | Other | lineage4 | None | SRR5341455 | Sensitive | lineage4 | None | ERR2693231 | Other | None | SRR5341469 | Other | lineage4 | None | ERR4821811 | RR-TB | lineage4.9 | None | SRR5341456 | Other | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | SRR5341470 | HR-TB | None | SRR6045503 | HR-TB | None | ERR2693230 | Other | None | ERR2693254 | Other | None | ERR2693239 | HR-TB | None | SRR5535933 | HR-TB | None | ERR2693257 | Other | None | SRR6045526 | HR-TB | None | SRR6045519 | HR-TB | None | ERR4821757 | Sensitive | lineage1.1.2 | None | ERR2660539 | Other | lineage4.9 | None | ERR2693227 | Other | lineage4.9 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR6045555 | HR-TB | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6045706 | Sensitive | lineage4 | None | SRR6044790 | HR-TB | None | SRR6044780 | Other | lineage4.9 | None | SRR6045892 | Sensitive | None | SRR6045952 | HR-TB | None | SRR6044890 | Other | lineage4.9 | None | SRR6046133 | HR-TB | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6044855 | Other | lineage4.9 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045010 | Other | lineage4 | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6045053 | Other | None | SRR6046210 | Other | lineage4 | None | SRR6045327 | HR-TB | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6045217 | Other | lineage4 | None | SRR6046046 | Other | None | SRR6325442 | HR-TB | None | SRR6045399 | Other | None | SRR6046066 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6046362 | HR-TB | None | SRR6046299 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6046397 | Other | None | SRR6046385 | Other | lineage4.9 | None | ERR278594 | HR-TB | None | SRR6046382 | HR-TB | lineage2.2.1 | None | ERR2851356 | Sensitive | lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | SRR6046492 | Other | None | SRR6046514 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6325444 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6046644 | HR-TB | None | SRR6046802 | Other | lineage4 | None | SRR6046878 | HR-TB | lineage4 | None | SRR6046897 | Sensitive | lineage4 | None | SRR6511621 | HR-TB | None | ERR323036 | HR-TB | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR4831657 | MDR-TB | lineage2.2.1 | None | ERR294266 | HR-TB | None | ERR294248 | HR-TB | None | ERR5311090 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR502532 | HR-TB | None | ERR502510 | Sensitive | lineage4 | None | ERR5311081 | HR-TB | None | ERR5311099 | HR-TB | None | SRR7496523 | Other | lineage4.7 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR8217918 | HR-TB | None | SRR7496509 | Other | None | SRR7496517 | Other | None | SRR9970980 | Other | lineage4.1.2 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR323039 | HR-TB | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR323053 | HR-TB | None | ERR323107 | Other | lineage4 | None | ERR323066 | Sensitive | lineage4 | None | ERR323063 | HR-TB | None | DRR188519 | Other | lineage4.4.2 | None | ERR323085 | Sensitive | lineage4 | None | ERR067699 | HR-TB | lineage4 | None | ERR323108 | HR-TB | lineage4 | None | ERR1063862 | HR-TB | None | ERR1023525 | HR-TB | lineage4 | None | ERR1034652 | Other | None | ERR1035122 | Sensitive | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063855 | Other | lineage4 | None | ERR1063857 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR1063859 | HR-TB | None | ERR1063896 | Sensitive | None | ERR137286 | Sensitive | lineage4 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR133825 | Sensitive | lineage4 | None | ERR3283010 | Other | La1 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283025 | HR-TB | None | ERR3283014 | HR-TB | None | ERR3283017 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283028 | Other | None | ERR3283024 | Other | None | ERR3283032 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3283031 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3445504 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3445503 | HR-TB | None | ERR3797016 | HR-TB | None | ERR363456 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR3797014 | Other | None | ERR3797015 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3797017 | Other | None | ERR3797043 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797044 | Other | None | ERR3797069 | Other | None | ERR3797048 | HR-TB | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797061 | Other | None | ERR3797063 | HR-TB | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797064 | Sensitive | None | ERR387051 | HR-TB | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797086 | Other | lineage4.9 | None | ERR3797082 | Other | lineage4.9 | None | ERR3797087 | Sensitive | lineage4 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4024991 | Other | None | ERR4769457 | Other | lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4596910 | Sensitive | lineage4 | None | ERR473332 | Other | lineage4 | None | ERR4769408 | Other | La1.3 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4188350 | HR-TB | None | ERR4407463 | HR-TB | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769452 | HR-TB | None | ERR4769521 | HR-TB | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769450 | HR-TB | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4769555 | Other | La1.3 | None | ERR4769552 | Other | La1.3 | None | ERR4796577 | MDR-TB | None | ERR4796254 | Sensitive | lineage4 | None | ERR4798262 | HR-TB | La1 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR4798099 | Other | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797474 | Other | None | ERR4798823 | HR-TB | lineage4 | None | ERR4798504 | Other | lineage3 | None | ERR4798431 | HR-TB | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4799378 | Sensitive | lineage4 | None | ERR4799025 | Pre-XDR-TB | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4811105 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4810741 | HR-TB | None | ERR6358979 | Other | None | ERR4811142 | MDR-TB | None | ERR4811493 | HR-TB | None | ERR5336148 | Other | None | ERR6358837 | HR-TB | None | ERR6358951 | HR-TB | lineage4 | None | ERR6358991 | HR-TB | None | ERR6359070 | Other | lineage4.9 | None | ERR6359066 | HR-TB | lineage4 | None | ERR6359045 | HR-TB | None | ERR6865502 | Sensitive | lineage4 | None | ERR6359069 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6866807 | HR-TB | lineage4 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR6866410 | Sensitive | None | ERR6866639 | Other | None | ERR6866022 | Other | None | ERR6866547 | Sensitive | lineage4 | None | ERR736835 | HR-TB | None | ERR702406 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736834 | Sensitive | lineage4 | None | ERR736839 | Other | None | ERR736865 | HR-TB | None | ERR736875 | HR-TB | lineage4 | None | ERR736872 | Sensitive | lineage4 | None | ERR752229 | Other | lineage4.5 | None | ERR751326 | Sensitive | lineage4 | None | ERR9119669 | HR-TB | None | ERR7801175 | RR-TB | lineage4.6.5 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR8976043 | HR-TB | None | ERR9117709 | HR-TB | None |
|---|
