lineage | Count |
---|---|
lineage4.9 | 20 |
lineage4 | 50 |
La1.8.1 | 2 |
82 | |
lineage4.1 | 2 |
lineage7;lineage2.2.1.2 | 1 |
lineage9;lineage3.1 | 1 |
lineage4.9;lineage4.6.3 | 1 |
lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
lineage3;lineage2.1 | 1 |
lineage4.3 | 1 |
lineage2.1 | 1 |
lineage4.1.1.3 | 1 |
lineage4.1.1.2 | 1 |
lineage4.3.4.2.1 | 1 |
lineage2.2.1 | 4 |
lineage4.9;lineage2.1 | 1 |
lineage4.1.2.1 | 6 |
lineage1.1 | 1 |
lineage3.1 | 2 |
La2 | 1 |
lineage4.1.2 | 1 |
lineage4.3.1 | 1 |
La1.2 | 1 |
La1 | 1 |
lineage3.1.2 | 1 |
lineage4.5 | 1 |
lineage4.1.2.1.1 | 1 |
lineage4.3.2 | 1 |
lineage1.1.3.1 | 1 |
La3 | 1 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
lineage4.4.1.1 | 1 |
spoligotype | Count |
---|---|
None | 193 |
ID | Drug resistance | Lineage | Country iso2 | SRR1175496 | HR-TB | lineage4.9 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1175508 | Other | lineage4.9 | None | SRR13861500 | RR-TB | lineage4.9 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | SRR13861534 | Other | lineage4.9 | None | SRR1640750 | HR-TB | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | SRR26399490 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675455 | Sensitive | lineage4 | None | ERR1035239 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR6325445 | HR-TB | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675482 | HR-TB | None | SRR3675488 | HR-TB | None | ERR161033 | HR-TB | None | SRR3675486 | HR-TB | None | ERR3275450 | Other | lineage4 | None | SRR3675222 | Other | None | ERR176568 | Other | lineage4.3 | None | ERR702405 | Sensitive | lineage2.1 | None | SRR3675501 | HR-TB | None | SRR3675229 | Other | lineage4 | None | SRR3675246 | Sensitive | lineage4 | None | ERR176643 | HR-TB | None | SRR3675279 | Other | None | SRR3675383 | HR-TB | None | ERR176740 | HR-TB | None | SRR3675387 | Sensitive | None | ERR176751 | HR-TB | None | SRR3675522 | Other | None | SRR3675545 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR212034 | HR-TB | None | ERR212033 | HR-TB | None | SRR3675558 | HR-TB | None | ERR212121 | HR-TB | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None | SRR5341366 | Sensitive | lineage4 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR4819051 | Other | lineage4 | None | SRR5341453 | Sensitive | None | ERR3275196 | Other | lineage2.2.1 | nl | SRR5341299 | Sensitive | lineage4 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341396 | Other | lineage4 | None | ERR1035138 | MDR-TB | None | SRR5341456 | Other | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR5341300 | Other | lineage4 | None | SRR5341387 | Other | lineage4 | None | SRR5341425 | Other | lineage4 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341323 | Sensitive | lineage4 | None | SRR5341308 | Sensitive | lineage4 | None | ERR2446382 | Other | lineage4 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR5341470 | HR-TB | None | SRR5341467 | Other | lineage4 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR2446563 | Other | lineage2.2.1 | nl | SRR5341469 | Other | lineage4 | None | ERR2517475 | Other | lineage4 | None | ERR278594 | HR-TB | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | ERR2693239 | HR-TB | None | ERR4821655 | Sensitive | lineage4 | None | SRR6045519 | HR-TB | None | SRR6045892 | Sensitive | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR6044780 | Other | lineage4.9 | None | ERR2693227 | Other | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6045010 | Other | lineage4 | None | SRR6046514 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6046245 | Other | lineage4.9 | None | SRR6325444 | HR-TB | None | ERR4830353 | Other | None | SRR6325442 | HR-TB | None | SRR6046299 | HR-TB | None | SRR6046492 | Other | None | SRR6325448 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046611 | HR-TB | lineage4.9 | None | ERR294248 | HR-TB | None | ERR502510 | Sensitive | lineage4 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6511621 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | ERR4831117 | HR-TB | None | ERR323036 | HR-TB | None | SRR6855742 | Sensitive | lineage2.2.1 | None | SRR6982316 | Sensitive | lineage4.1.2.1 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR502524 | HR-TB | La2 | None | ERR5311099 | HR-TB | None | ERR502943 | HR-TB | None | ERR323038 | HR-TB | None | ERR5311081 | HR-TB | None | SRR8217918 | HR-TB | None | ERR5311090 | HR-TB | None | SRR7535082 | Sensitive | lineage4 | None | ERR323107 | Other | lineage4 | None | ERR323039 | HR-TB | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR323041 | HR-TB | None | ERR323055 | HR-TB | None | ERR323066 | Sensitive | lineage4 | None | ERR323053 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323063 | HR-TB | None | ERR323085 | Sensitive | lineage4 | None | ERR323108 | HR-TB | lineage4 | None | ERR1063896 | Sensitive | None | ERR067699 | HR-TB | lineage4 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1034652 | Other | None | ERR1035122 | Sensitive | None | ERR1063883 | Sensitive | lineage4 | None | ERR3283017 | HR-TB | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR137286 | Sensitive | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR133825 | Sensitive | lineage4 | None | ERR3445504 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3797083 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR400326 | Sensitive | lineage4 | None | ERR4797313 | HR-TB | None | ERR4188350 | HR-TB | None | ERR4407492 | MDR-TB | lineage4.3.1 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4798262 | HR-TB | La1 | None | ERR4797474 | Other | None | ERR4798099 | Other | None | ERR4811030 | Sensitive | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4811493 | HR-TB | None | ERR736834 | Sensitive | lineage4 | None | ERR6358837 | HR-TB | None | ERR6358991 | HR-TB | None | ERR6866410 | Sensitive | None | ERR4812155 | Sensitive | None | ERR6358979 | Other | None | ERR6866547 | Sensitive | lineage4 | None | ERR751326 | Sensitive | lineage4 | None | ERR736856 | HR-TB | lineage4 | None | ERR736872 | Sensitive | lineage4 | None | ERR736865 | HR-TB | None | ERR8976043 | HR-TB | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR1169306 | Other | None | SRR1158918 | Sensitive | lineage4 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1169249 | Other | La3 | None | ERR987722 | HR-TB | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | SRR10808805 | Sensitive | None | SRR10809074 | Sensitive | lineage4 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR1172146 | Sensitive | lineage4.9 | None | SRR1173777 | Other | lineage4 | None | SRR1172310 | HR-TB | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1174897 | HR-TB | None |
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