Rv3696c - c.1125C>G


Drug resistance types
68 Sensitive 18 RR-TB 97 HR-TB 47 MDR-TB 4 Pre-XDR-TB 0 XDR-TB 72 Other
lineage Counts
lineage Count
lineage4.9 120
3
M.canetti;lineage2.1;lineage4.9 24
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 4
lineage4.1.1.3;lineage4.9 2
La1.7.1 1
M.canetti;lineage4.1.1.3;lineage6.3;lineage8 1
lineage2.2.1 13
lineage3 3
M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 1
La3;M.canetti;lineage2.1;lineage4.9 12
lineage4.9;lineage6.3 2
M.canetti;lineage2.1;lineage4.9;lineage6.3 6
La1.8.1 2
lineage4.5 2
lineage6.1.1 2
lineage2.2 4
lineage2.2.1.2 1
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 1
lineage4.3.3 3
lineage2.1;lineage4.9 5
La1.7;lineage4.9;lineage7 2
lineage2.1;lineage4.3.2 1
La3;M.canetti;lineage4.9 2
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
lineage4.8 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 4
La1.6;La3;lineage4.9 1
lineage4.1;lineage4.9 2
lineage4.4.1.1 2
La3;lineage4.3.4 1
lineage4.9;lineage9 3
lineage2.1;lineage4.1.1.1;lineage6.3 2
La1;lineage4.9 1
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 1
La1.7.1;La1.7.X-unk4;lineage7 1
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 2
La1;lineage4.1.2 1
lineage4.9;lineage7 5
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 1
La3;lineage2.1;lineage4.9;lineage6.3 1
lineage2.1;lineage2.2;lineage6.3 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9 1
lineage1.1.1;lineage4 1
M.canetti;lineage2.1 1
M.canetti;lineage2.1;lineage3 1
La1.7;lineage4.9 4
lineage2.1;lineage4.9;lineage7 1
lineage1;lineage4.9 1
La3;lineage4.9 1
lineage2.2.1.2;lineage7 1
La1.7;lineage4.9;lineage6 1
lineage2.1;lineage4.9;lineage6.3 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9 2
lineage4.2.1.1;lineage4.3.3 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 1
lineage2.2.1;lineage4 1
La3;M.canetti;lineage2.1;lineage3.1 1
La2;lineage4.9 1
lineage4.1.2.1 6
M.canetti;lineage4.3.1;lineage4.9 1
M.canetti;lineage1 1
lineage2.1;lineage4.1.4;lineage4.9 1
M.canetti;lineage2.1;lineage4.1.2.1 1
lineage4.3.4.2.1 2
La2;lineage4.9;lineage9 1
M.canetti;lineage2.1;lineage6.3 1
lineage4.1.2.1.1 1
lineage1.1.3.1 1
M.canetti;lineage4.9 1
lineage4.3.2;lineage4.9 1
La1.6;lineage4 1
La3;M.canetti;lineage4.8;lineage4.9 1
lineage4.9;lineage6.1.3 1
M.canetti;lineage4.9;lineage9 1
M.canetti;lineage2.1;lineage4 1
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
lineage4 2
lineage4.1.1.3 1
M.canetti;lineage2.2 1
lineage1.1.2;lineage4 1
lineage3.1.2.2 1
lineage2.1;lineage4.9;lineage6.3;lineage8 1
lineage1.1.3.2 1
La1.7;lineage3;lineage4.9;lineage7 1
lineage1.1 1
La3;M.canetti;lineage3.1 1
lineage5.1.4 1
spoligotype Counts
spoligotype Count
None 306
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR20632814 Sensitive lineage4.9 None
ERR987722 MDR-TB None
ERR473314 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR126600 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR349264 Sensitive lineage4.9 None
SRR1175500 Sensitive lineage4.1.1.3;lineage4.9 None
SRR7240492 HR-TB La1.7.1 None
SRR1175507 Sensitive lineage4.1.1.3;lineage4.9 None
SRR3675558 HR-TB M.canetti;lineage4.1.1.3;lineage6.3;lineage8 None
SRR6046382 Sensitive lineage2.2.1 None
SRR1640750 Other None
SRR17832802 HR-TB lineage3 None
SRR3675568 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 None
ERR3275196 Other lineage2.2.1 nl
ERR323060 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6045217 Sensitive lineage4.9 None
ERR502524 HR-TB lineage4.9;lineage6.3 None
ERR5311098 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR1063858 HR-TB lineage4.9 None
ERR3797023 HR-TB La1.8.1 None
ERR4811030 Sensitive lineage4.9 None
ERR752229 Other lineage4.5 None
ERR4818929 HR-TB lineage4.9 None
SRR1172310 HR-TB lineage4.9 None
ERR4811031 Sensitive lineage4.5 None
SRR3675270 Other lineage4.9 None
ERR9787014 Other lineage6.1.1 None
ERR323063 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4810624 MDR-TB lineage2.2 None
SRR1175127 Other lineage2.2.1.2 None
ERR3283024 Other La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 None
SRR12708409 HR-TB lineage4.3.3 None
ERR323058 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR2693242 RR-TB lineage2.1;lineage4.9 None
ERR363498 Sensitive lineage4.9 None
SRR3675506 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311083 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR5341313 Sensitive La1.7;lineage4.9;lineage7 None
ERR5311081 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR772255 MDR-TB lineage2.1;lineage4.3.2 None
ERR3797083 RR-TB lineage4.9 None
SRR5341432 Sensitive La1.7;lineage4.9;lineage7 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
SRR20969708 HR-TB lineage2.2 None
ERR5311101 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6046046 Other lineage4.9 None
ERR323036 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
ERR126608 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR323040 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675279 Sensitive lineage4.9 None
ERR4799025 Other lineage4.8 None
SRR5341345 Sensitive lineage4.9 None
SRR14782054 Other lineage4.9 None
SRR3675486 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR2693254 Other La1.6;La3;lineage4.9 None
SRR12708374 Sensitive lineage4.1;lineage4.9 None
SRR12708398 Sensitive lineage4.4.1.1 None
ERR4769521 RR-TB lineage4.9 None
ERR161033 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR161039 HR-TB La3;lineage4.3.4 None
SRR5341470 MDR-TB lineage4.9;lineage9 None
ERR161037 Other lineage4.9 None
SRR3675582 Other lineage4.9 None
ERR400326 Other lineage4.9 None
SRR6325447 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
SRR6046720 HR-TB lineage4.9;lineage9 None
SRR10808805 Other La1;lineage4.9 None
SRR6046644 HR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
SRR6458421 MDR-TB lineage2.2.1 None
ERR1063862 HR-TB lineage4.9 None
ERR278594 HR-TB lineage2.1;lineage4.9 None
ERR2229143 RR-TB lineage4.9 None
ERR363509 Sensitive lineage4.9 None
SRR29097023 Sensitive lineage4.9 None
ERR2693230 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR363499 Sensitive lineage4.9 None
SRR12708372 Sensitive lineage4.9 None
ERR212138 HR-TB lineage4.9 None
SRR6045948 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3283010 Sensitive La1.8.1 None
ERR369160 Sensitive lineage4.9 None
ERR1063849 HR-TB lineage4.9 None
ERR4816656 Other lineage4.9 None
SRR14782405 HR-TB lineage4.9 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
SRR3675450 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR473332 Other lineage4.9 None
ERR323055 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR9970978 Sensitive La1;lineage4.1.2 None
ERR2660539 Other lineage4.9 None
SRR3675456 RR-TB lineage4.9;lineage7 None
ERR3797046 HR-TB lineage4.9 None
SRR3675494 RR-TB lineage4.9 None
SRR26331611 Sensitive lineage4.9 None
ERR3799304 Other lineage6.1.1 None
ERR5311102 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR373947 Other lineage4.9 None
ERR3283017 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR8976043 HR-TB lineage2.1;lineage2.2;lineage6.3 None
SRR6046225 Other lineage4.9;lineage6.3 None
SRR3675320 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4831638 Sensitive lineage1.1.1;lineage4 None
ERR323041 HR-TB M.canetti;lineage2.1 None
ERR4814536 MDR-TB M.canetti;lineage2.1;lineage3 None
SRR11662690 HR-TB lineage4.9 None
SRR5341456 Other lineage4.9 None
ERR4811493 HR-TB lineage4.9 None
ERR9119096 RR-TB lineage4.3.3 None
ERR3283025 MDR-TB La1.7;lineage4.9 None
SRR6325442 HR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
ERR369159 Sensitive lineage4.9 None
ERR124652 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3283055 HR-TB lineage4.9 None
SRR1180226 HR-TB lineage4.9 None
SRR19295647 Sensitive lineage4.9 None
SRR1173453 Other lineage4.4.1.1 None
SRR3675243 Other lineage4.9 None
SRR3675555 HR-TB lineage2.1;lineage4.9;lineage7 None
SRR3675545 Other La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6046878 Other lineage4.9 None
ERR6358837 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR4797350 Sensitive lineage1;lineage4.9 None
SRR29096410 Other lineage4.9 None
ERR4819241 Other lineage4.9 None
ERR176658 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR181744 HR-TB La3;lineage4.9 None
SRR18549032 HR-TB lineage2.2.1.2;lineage7 None
ERR6866547 Other La1.7;lineage4.9;lineage6 None
SRR3675508 Other lineage2.1;lineage4.9;lineage6.3 None
ERR2693229 RR-TB La3;M.canetti;lineage4.9 None
SRR3675322 HR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
ERR1035239 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR363453 Sensitive lineage4.9 None
SRR9971114 Other lineage2.2.1 None
SRR3675507 Other lineage4.9 None
ERR867542 HR-TB lineage4.2.1.1;lineage4.3.3 None
ERR3797044 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 None
SRR6046514 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1175496 Sensitive lineage4.9 None
ERR369163 Sensitive lineage4.9 None
ERR294248 MDR-TB lineage2.1;lineage4.9 None
ERR502943 Sensitive lineage2.2.1;lineage4 None
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
SRR5535933 Other lineage4.9 None
ERR9119669 HR-TB lineage4.9 None
ERR5311100 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4820773 HR-TB lineage4.9 None
ERR323039 HR-TB La2;lineage4.9 None
ERR4821686 Sensitive lineage4.1.2.1 None
ERR6866410 Sensitive lineage4.9 None
SRR3675231 MDR-TB lineage4.9;lineage7 None
ERR363506 Sensitive lineage4.9 None
SRR1166821 Other lineage4.1.2.1 None
SRR3675455 Sensitive lineage4.9 None
SRR6325445 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR323107 Sensitive lineage4.9 None
ERR363479 Sensitive lineage4.9 None
ERR108125 RR-TB lineage4.9 None
SRR3675473 Sensitive lineage4.9 None
ERR736856 Sensitive lineage4.9 None
SRR29096425 Sensitive lineage4.9 None
SRR6046133 HR-TB lineage4.9 None
ERR212123 Other lineage4.9 None
ERR3468544 Other lineage2.1;lineage4.9 None
SRR6046593 Other lineage4.9 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
ERR4769450 Other lineage4.9 None
ERR9119138 RR-TB M.canetti;lineage4.3.1;lineage4.9 None
ERR3283016 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR29096174 Sensitive La1.7;lineage4.9 None
SRR15014655 Other M.canetti;lineage1 None
ERR3797036 HR-TB lineage2.1;lineage4.1.4;lineage4.9 None
ERR5311082 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
SRR20970043 MDR-TB lineage2.2.1 None
ERR1023525 HR-TB La1.7;lineage4.9 None
ERR1023295 MDR-TB M.canetti;lineage2.1;lineage4.1.2.1 None
ERR11465015 Sensitive lineage4.3.4.2.1 None
ERR323053 MDR-TB La2;lineage4.9;lineage9 None
ERR5311089 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6046564 Sensitive lineage4.9 None
SRR6045290 RR-TB M.canetti;lineage2.1;lineage4.9 None
SRR29096107 Sensitive lineage4.9 None
ERR4817731 HR-TB lineage4.9 None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
ERR760733 MDR-TB lineage4.1.2.1.1 None
SRR3675518 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR4812155 Other lineage4.9 None
SRR3675229 Sensitive lineage4.9 None
ERR5311099 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR8479578 Sensitive lineage1.1.3.1 None
SRR3675247 Other lineage4.9 None
SRR29097026 Other lineage4.9 None
ERR4831117 HR-TB lineage4.9;lineage7 None
ERR5311094 HR-TB lineage4.9 None
ERR4799513 HR-TB lineage2.2 None
SRR1183111 HR-TB lineage4.9 None
ERR5908228 RR-TB lineage4.3.3 None
SRR12708416 Sensitive None
ERR5311090 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR2010299 MDR-TB lineage2.2.1 None
SRR6046485 Other lineage4.9 None
ERR323038 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR29097037 Other lineage4.9 None
SRR10808730 Other lineage4.9 None
ERR2509673 Other lineage2.2.1 None
ERR4797313 Sensitive lineage2.2.1 None
SRR1162864 Other lineage4.1.2.1 None
SRR6044815 Other lineage4.9 None
ERR363446 Sensitive lineage4.9 None
SRR3675539 HR-TB lineage4.9;lineage7 None
SRR3675487 Other M.canetti;lineage4.9 None
ERR323047 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3445502 Sensitive lineage4.9;lineage7 None
ERR4819422 HR-TB lineage4.9 None
ERR736865 HR-TB lineage4.3.2;lineage4.9 None
SRR6045555 Other lineage4.9 None
SRR9971270 RR-TB lineage2.2.1 None
SRR3675477 Sensitive lineage4.9 None
SRR28351554 Sensitive La1.6;lineage4 None
SRR29096203 Sensitive lineage4.9 None
SRR3675444 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3797016 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323044 HR-TB lineage4.3.4.2.1 None
ERR038268 HR-TB La3;M.canetti;lineage4.8;lineage4.9 None
ERR3445504 Other lineage4.9;lineage6.1.3 None
SRR6045952 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4188342 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3283040 HR-TB lineage4.9 None
ERR3468607 Other lineage4.9 None
ERR4798431 Sensitive lineage4.1;lineage4.9 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
ERR2693239 RR-TB M.canetti;lineage2.1;lineage4 None
ERR387051 Other lineage4.9 None
SRR3675580 Sensitive lineage4.9 None
ERR400320 Sensitive lineage4.9 None
SRR3675522 Other lineage4.9 None
SRR12708384 Sensitive lineage4.9 None
ERR5162090 RR-TB lineage4.9 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR4821053 RR-TB lineage3 None
SRR6045053 Other lineage4 None
SRR1163221 MDR-TB lineage4.1.2.1 None
ERR2693228 RR-TB lineage4.9 None
SRR20969731 Other lineage2.2.1 None
SRR6045548 Sensitive lineage4.9 None
SRR14801759 HR-TB La1.7;lineage4.9 None
ERR4816551 HR-TB lineage4.1.1.3 None
ERR1873396 Pre-XDR-TB M.canetti;lineage2.2 None
SRR1174897 MDR-TB lineage4.9;lineage9 None
ERR3283030 HR-TB lineage4.9 None
ERR373945 Sensitive lineage4.9 None
ERR3797015 HR-TB lineage4.9 None
SRR5341330 Other lineage4.9 None
ERR400345 Other lineage4.9 None
SRR6045347 Other lineage4.9 None
SRR26399490 Sensitive lineage4.9 None
ERR5311078 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6045219 HR-TB lineage4.9 None
ERR4817692 HR-TB lineage1.1.2;lineage4 None
ERR4769474 HR-TB lineage4.9 None
ERR4798648 MDR-TB lineage3.1.2.2 None
SRR6046245 Other lineage4.9 None
ERR2041726 MDR-TB lineage4.1.2.1 None
SRR3675481 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4815441 HR-TB lineage4.9 None
SRR5341323 Sensitive lineage4.9 None
SRR6045371 Other lineage4.9 None
SRR5709967 MDR-TB lineage2.2.1 None
SRR3675561 Other M.canetti;lineage2.1;lineage4.9 None
ERR3283032 Other lineage4.9 None
SRR3675515 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675464 HR-TB lineage2.1;lineage4.9;lineage6.3;lineage8 None
ERR4819877 HR-TB lineage4.9 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4816478 HR-TB lineage4 None
SRR3675387 Other lineage4.9 None
ERR4188350 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR8217918 HR-TB lineage4.9 None
SRR28868888 Other lineage1.1.3.2 None
SRR6046594 Sensitive lineage4.9 None
ERR176766 HR-TB lineage2.1;lineage4.9 None
SRR29096150 Other lineage4.9 None
ERR3797086 Sensitive lineage4.9 None
SRR6045706 Sensitive lineage4.9 None
SRR6044819 Sensitive lineage4.9 None
ERR4769452 Other lineage4.9 None
ERR5311096 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR373946 Sensitive lineage4.9 None
SRR5341315 Other La1.7;lineage3;lineage4.9;lineage7 None
SRR6045892 Sensitive lineage4.9 None
ERR3077978 RR-TB lineage1.1 None
ERR2041725 MDR-TB lineage4.1.2.1 None
ERR6359082 Other lineage4.9 None
ERR1873393 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
ERR2513283 Sensitive lineage5.1.4 None
ERR386953 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR20970016 Other lineage2.2 None
SRR3675554 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR5341412 Pre-XDR-TB lineage3 None
SRR6325448 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None