Rv0001 - c.1215C>T
Drug resistance types
1 Sensitive
7 RR-TB
11 HR-TB
12 MDR-TB
0 Pre-XDR-TB
3 XDR-TB
7 Other
lineage Counts
| lineage | Count |
|---|---|
| 2 | |
| lineage3.1;lineage9 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| lineage4.9 | 6 |
| La3;lineage4.9 | 3 |
| lineage4.9;lineage9 | 2 |
| lineage4.9;lineage6.3 | 2 |
| lineage4.2;lineage4.9 | 3 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| lineage2.2.1 | 3 |
| lineage2.2.1.1 | 2 |
| M.canetti;lineage2.2 | 2 |
| La2;lineage4.9 | 2 |
| La1;lineage4.9 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.3.4.2.1 | 2 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
| La1.2 | 1 |
| lineage3.1.2.1;lineage3.1.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 41 |
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR212001 | HR-TB | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR4816466 | HR-TB | lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR4828872 | RR-TB | lineage4.2;lineage4.9 | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | SRR1180172 | RR-TB | lineage2.2.1 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR23961542 | Other | La1;lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR161149 | Sensitive | lineage4.3.4.2.1 | mw | SRR3675571 | MDR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR176751 | HR-TB | lineage4.9 | None | SRR1165628 | Other | La3;lineage4.9 | None | SRR1180147 | RR-TB | lineage2.2.1.1 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR7821163 | Other | lineage2.2.1 | None | SRR1183144 | RR-TB | lineage2.2.1 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR987722 | MDR-TB | None | SRR23961549 | Other | La1.2 | None | SRR6046295 | MDR-TB | lineage4.2;lineage4.9 | None | ERR161034 | HR-TB | lineage4.3.4.2.1 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR1172310 | MDR-TB | lineage4.9 | None | ERR987729 | MDR-TB | lineage3.1.2.1;lineage3.1.2.2 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR502524 | MDR-TB | lineage4.9;lineage6.3 | None | ERR323039 | MDR-TB | La2;lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None |
|---|
