Rv3596c - c.1443C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
48 Sensitive
1 RR-TB
18 HR-TB
6 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
26 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 48 |
| La1.7;lineage4.9;lineage7 | 3 |
| La2;lineage4.9 | 1 |
| lineage2.2.1 | 7 |
| lineage1.1.2 | 6 |
| lineage4.4.1.2 | 1 |
| lineage6.1.1 | 2 |
| lineage3.1.2.2 | 1 |
| lineage4.3 | 1 |
| lineage4.2.1 | 1 |
| lineage4.4.2 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage6.3 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.9;lineage9 | 2 |
| lineage3.1.2.1 | 1 |
| lineage1.1.1;lineage4 | 1 |
| lineage3 | 5 |
| 3 | |
| lineage4.3.2;lineage4.9 | 1 |
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage1;lineage4.9 | 1 |
| lineage4.5 | 1 |
| lineage4.1.1 | 1 |
| lineage4.3.3 | 1 |
| lineage2.2.1;lineage4 | 1 |
| La1.7.1;lineage4.9 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage3;lineage4.9 | 1 |
| lineage5.1.4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 101 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4811030 | Sensitive | lineage4.9 | None | SRR6046611 | Sensitive | lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR369151 | Other | lineage4.9 | None | SRR3675580 | Sensitive | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | ERR3276187 | Sensitive | lineage1.1.2 | nl | SRR5341345 | Sensitive | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR400326 | Other | lineage4.9 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | ERR867542 | HR-TB | lineage4.3 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | SRR20969375 | Sensitive | lineage2.2.1 | None | ERR4596910 | Sensitive | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | SRR29385378 | Pre-XDR-TB | lineage4.4.2 | None | ERR4812155 | Other | lineage4.9 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR29096150 | Other | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR29096410 | Other | lineage4.9 | None | SRR21733313 | Sensitive | lineage1.1.2 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | SRR3675279 | Sensitive | lineage4.9 | None | SRR5341425 | Other | lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | SRR11662694 | Other | lineage4.9 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR9787014 | Other | lineage6.1.1 | None | SRR6046564 | Sensitive | lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | SRR5341303 | Sensitive | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR3675247 | Other | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR29097026 | Other | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | SRR5341298 | Sensitive | lineage4.9 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR7069905 | Sensitive | lineage3 | None | ERR987722 | MDR-TB | None | ERR4830703 | Sensitive | lineage1.1.2 | dz | SRR1180226 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR2513448 | Sensitive | lineage3 | gb | SRR3675477 | Sensitive | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR28351347 | Other | lineage3 | None | DRR473760 | Sensitive | lineage4.1.1 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR6046210 | Other | lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR4816824 | Sensitive | lineage1.1.2 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | SRR8692887 | Other | None | ERR4798504 | RR-TB | lineage3 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR17832802 | HR-TB | lineage3 | None | SRR12708372 | Sensitive | lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR12708416 | Sensitive | None | SRR5341396 | Other | lineage3;lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR21691035 | Sensitive | lineage1.1.2 | None |
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