Rv0676c - c.2544G>C


Drug resistance types
26 Sensitive 6 RR-TB 54 HR-TB 19 MDR-TB 5 Pre-XDR-TB 2 XDR-TB 53 Other
lineage Counts
lineage Count
lineage4.9 39
M.canetti;lineage2.1;lineage4.9 8
La3;lineage4.9 14
M.canetti;lineage4.9 3
lineage2.2 2
lineage2.1;lineage4.9;lineage6.3 4
La3;M.canetti;lineage2.1;lineage4.9 7
lineage4.3.3 2
La1.7;lineage4.9 3
lineage4.9;lineage6.3 8
La1.6;lineage4 1
lineage2.1;lineage4.9 2
lineage4.1.2.1 2
lineage4.3.4.2.1 3
La1.8.1 1
La2;lineage4.9 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
lineage4.8 3
lineage4.3.4.1 2
lineage2.2.1 3
La1.6;La3;M.canetti;lineage2.1;lineage4.9 1
5
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 3
lineage3 1
lineage2.1 2
La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 1
La1.2 1
La1.7;M.canetti;lineage4.9 2
M.canetti;lineage2.1 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
M.canetti;lineage2.1;lineage4.9;lineage6.3 3
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 1
M.canetti;lineage2.2 3
lineage4.9;lineage7 1
M.canetti;lineage2.2.2;lineage6.2 2
La3;lineage2.1;lineage4.9 2
La1.7.1 1
La3;M.canetti;lineage4.9 2
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
lineage4.9;lineage9 1
lineage2.2.1;lineage6.3 1
lineage3.1.2.2 1
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
M.canetti;lineage2.1;lineage4.1.2.1 1
lineage4.1.2.1.1 1
lineage1.1.3.1 1
La1.7.1;La1.7.X-unk4;lineage7 1
lineage2.2.1;lineage4.1.2.1 1
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
lineage2.1;lineage2.2;lineage6.3 1
La1.2.BCG 1
La3;M.canetti;lineage3.1 1
lineage4.6.3;lineage4.9 1
lineage4.3.2;lineage4.9 1
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 1
La1.7;lineage4.9;lineage6 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 1
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9 1
spoligotype Counts
spoligotype Count
None 165
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR3283032 Other lineage4.9 None
ERR926159 Sensitive lineage4.9 None
SRR6045290 RR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4816466 HR-TB lineage4.9 None
ERR3797064 Other La3;lineage4.9 None
ERR176643 Other La3;lineage4.9 None
ERR926164 Other lineage4.9 None
SRR14782405 HR-TB lineage4.9 None
ERR176751 Other lineage4.9 None
ERR3797086 Sensitive lineage4.9 None
SRR6045519 MDR-TB M.canetti;lineage4.9 None
ERR3797065 RR-TB lineage4.9 None
ERR4799513 HR-TB lineage2.2 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
ERR3283057 Sensitive La3;lineage4.9 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4797264 Sensitive lineage4.9 None
ERR9119096 RR-TB lineage4.3.3 None
ERR3283025 MDR-TB La1.7;lineage4.9 None
ERR473314 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR28119756 Other lineage4.9;lineage6.3 None
SRR6045555 Other lineage4.9 None
SRR1165667 Other lineage4.9;lineage6.3 None
SRR1167384 Other La3;lineage4.9 None
SRR28351554 Sensitive La1.6;lineage4 None
SRR6045380 Other lineage2.1;lineage4.9 None
ERR13265528 Other lineage4.9;lineage6.3 None
SRR1165506 Other lineage4.1.2.1 None
ERR4810624 MDR-TB lineage2.2 None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR161034 HR-TB lineage4.3.4.2.1 None
ERR3797067 Other La1.8.1 None
ERR5311083 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR8665994 Other lineage4.9 None
SRR6044780 Sensitive lineage4.9 None
ERR6358979 Other lineage4.9 None
ERR3797048 Other La3;lineage4.9 None
ERR323039 HR-TB La2;lineage4.9 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
ERR176518 Sensitive lineage4.3.4.2.1 None
ERR323040 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4799025 Other lineage4.8 None
ERR736856 Sensitive lineage4.9 None
SRR3675235 Sensitive lineage4.9 None
SRR3675461 RR-TB lineage4.9 None
ERR11466444 Sensitive lineage4.3.4.1 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
ERR161033 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3283020 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.9 None
SRR6458421 MDR-TB lineage2.2.1 None
SRR3675236 Other None
ERR3283021 HR-TB lineage4.9 None
ERR2693230 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR4799171 Pre-XDR-TB lineage4.8 None
ERR4800341 Other lineage3 None
ERR323055 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4797054 Pre-XDR-TB lineage2.1 None
SRR3675585 Sensitive lineage4.9 None
SRR3675234 Other La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR23961549 Other La1.2 None
ERR5908228 RR-TB lineage4.3.3 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
ERR6359082 Other lineage4.9 None
ERR323041 HR-TB M.canetti;lineage2.1 None
SRR6045233 Other M.canetti;lineage4.9 None
ERR3797014 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR11662690 HR-TB lineage4.9 None
ERR11465579 Sensitive lineage4.3.4.1 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR3675554 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR25827682 Other None
SRR28119805 Other lineage4.9 None
ERR234659 Other None
ERR6359045 Other M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
SRR19295647 Sensitive lineage4.9 None
ERR3445502 Sensitive lineage4.9;lineage7 None
ERR926165 Sensitive lineage4.9 None
ERR926157 Sensitive lineage4.9 None
ERR1035239 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323058 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR26399973 Other La3;lineage4.9 None
SRR1792478 HR-TB La1.7.1 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
ERR5311101 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
SRR1163221 MDR-TB lineage4.1.2.1 None
ERR13285068 Sensitive lineage4.9 None
ERR126608 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1165628 Other La3;lineage4.9 None
ERR1873396 Pre-XDR-TB M.canetti;lineage2.2 None
SRR1174897 MDR-TB lineage4.9;lineage9 None
ERR3283014 Sensitive La3;lineage4.9 None
SRR6046133 HR-TB lineage4.9 None
SRR1169306 Other La3;lineage4.9 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
SRR29096879 Sensitive lineage4.9 None
ERR5311078 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6045219 HR-TB lineage4.9 None
ERR4798648 MDR-TB lineage3.1.2.2 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR3283016 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3283011 Other La3;lineage4.9 None
SRR6046644 HR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
ERR1023295 MDR-TB M.canetti;lineage2.1;lineage4.1.2.1 None
ERR108471 HR-TB lineage4.9 None
ERR11049020 Other lineage4.8 None
ERR760733 MDR-TB lineage4.1.2.1.1 None
ERR8479578 Sensitive lineage1.1.3.1 None
ERR9117709 Other None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
ERR473332 Other lineage4.9 None
ERR13265748 Other lineage4.9;lineage6.3 None
ERR11488822 Pre-XDR-TB lineage2.2.1;lineage4.1.2.1 None
SRR1183111 HR-TB lineage4.9 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
ERR8976043 HR-TB lineage2.1;lineage2.2;lineage6.3 None
ERR1873393 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4798262 HR-TB La1.2.BCG None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
SRR3675383 Sensitive lineage4.9 None
SRR26159047 Other lineage4.6.3;lineage4.9 None
ERR11252612 Other La3;lineage4.9 None
ERR212001 HR-TB None
ERR212033 Other lineage4.9 None
SRR28119752 Other lineage4.9 None
ERR124652 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR12142341 HR-TB lineage2.1 None
SRR1180226 HR-TB lineage4.9 None
ERR736865 HR-TB lineage4.3.2;lineage4.9 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
ERR502524 HR-TB lineage4.9;lineage6.3 None
ERR6358837 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR323044 HR-TB lineage4.3.4.2.1 None
SRR6045010 Sensitive lineage4.9 None
SRR6045952 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR176658 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR6866547 Other La1.7;lineage4.9;lineage6 None
SRR28351584 HR-TB lineage2.2.1 None
ERR11252599 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 None
ERR2693229 RR-TB La3;M.canetti;lineage4.9 None
SRR1172310 HR-TB lineage4.9 None
SRR3675507 Other lineage4.9 None
ERR3283024 Other La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR176568 HR-TB La3;lineage2.1;lineage4.9 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
ERR3797017 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR6325445 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR14801759 HR-TB La1.7;lineage4.9 None
ERR736839 HR-TB M.canetti;lineage4.9 None
ERR3283031 Sensitive La3;lineage4.9 None
ERR3468544 Other lineage2.1;lineage4.9 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4819051 Sensitive lineage4.9 None
ERR3797063 Sensitive La3;lineage4.9 None
ERR216938 HR-TB La1.7;lineage4.9 None
ERR3283047 Sensitive La3;lineage4.9 None
ERR5311082 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None