Rv2764c - p.Ala56Val
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
37 Sensitive
1 RR-TB
45 HR-TB
47 MDR-TB
10 Pre-XDR-TB
3 XDR-TB
35 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.6.3;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage4.2;lineage4.9 | 1 |
| lineage4.9 | 15 |
| lineage3.1 | 83 |
| 6 | |
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| lineage3.1;lineage9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 11 |
| La1.7;M.canetti;lineage4.9 | 3 |
| lineage4.1.2.1 | 5 |
| M.canetti;lineage4.9 | 2 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 4 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 2 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 3 |
| lineage2.1;lineage4.9 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.1.1.1 | 2 |
| lineage1.1.3.1;lineage3.1 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage4.9;lineage9 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.9;lineage7 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 3 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage6.3 | 2 |
| La3;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| lineage2.2 | 1 |
| lineage2.2.1 | 2 |
| lineage4.1.1;lineage4.9 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 178 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR124652 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | SRR2100981 | Sensitive | lineage3.1 | None | ERR9786604 | Other | None | SRR3675558 | HR-TB | M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | None | ERR114476 | MDR-TB | lineage3.1 | None | ERR6358837 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR29016823 | Pre-XDR-TB | lineage3.1 | None | ERR234111 | MDR-TB | lineage3.1 | np | ERR234232 | Sensitive | lineage3.1 | None | SAMEA4791099 | Sensitive | lineage3.1 | us | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR4553663 | MDR-TB | lineage3.1 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | ERR2693257 | Other | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | ERR4553498 | MDR-TB | lineage3.1 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR21690790 | Sensitive | lineage3.1 | None | SRR28045229 | Pre-XDR-TB | lineage3.1 | None | ERR13265172 | Sensitive | lineage3.1 | None | SRR29772492 | MDR-TB | lineage3.1 | None | SRR30182500 | HR-TB | lineage3.1 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR13265628 | Sensitive | lineage3.1 | None | ERR161037 | Other | lineage4.9 | None | SRR30182593 | Sensitive | lineage3.1 | None | ERR4811075 | Other | None | SRR29017619 | MDR-TB | lineage3.1 | None | SRR29230720 | Sensitive | lineage3.1 | None | ERR11043376 | MDR-TB | lineage4.1.2.1 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | SRR6045948 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR30182298 | Sensitive | lineage3.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR29017680 | MDR-TB | lineage3.1 | None | ERR176751 | Other | lineage4.9 | None | SRR29016848 | MDR-TB | lineage3.1 | None | ERR11067316 | HR-TB | lineage3.1 | None | ERR4553715 | MDR-TB | lineage3.1 | None | ERR13265531 | Sensitive | lineage3.1 | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR4800050 | Sensitive | lineage3.1 | in | SRR6046485 | Other | lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR3675554 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR12141665 | HR-TB | lineage4.1.2.1 | None | SRR28045555 | MDR-TB | lineage3.1 | None | SRR28046024 | Other | lineage3.1 | None | ERR1034589 | Pre-XDR-TB | lineage3.1 | pk | ERR1034591 | Pre-XDR-TB | lineage3.1 | pk | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR10808730 | Other | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR551397 | Sensitive | lineage3.1 | de | SRR2100324 | MDR-TB | lineage3.1 | None | ERR4821076 | Sensitive | lineage3.1 | gb | ERR2513554 | Sensitive | lineage3.1 | gb | SRR3675568 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | None | ERR13266158 | Sensitive | lineage3.1 | None | ERR2704696 | Sensitive | lineage3.1 | None | ERR2704697 | Sensitive | lineage3.1 | None | ERR4553661 | MDR-TB | lineage3.1 | None | ERR4188342 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR28170764 | Sensitive | lineage3.1 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | SRR6046514 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311083 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311100 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR2704697_ERR2704675_ERR2704696 | Sensitive | lineage3.1 | None | ERR2704675 | Sensitive | lineage3.1 | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR13266157 | Sensitive | lineage3.1 | None | ERR13265059 | Sensitive | lineage3.1 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | SRR6797475 | Other | lineage3.1 | None | ERR4811105 | HR-TB | None | ERR1140781 | Sensitive | lineage3.1 | None | ERR4810741 | HR-TB | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR9786617 | Other | lineage4.1.1.1 | None | ERR4553733 | MDR-TB | lineage3.1 | None | SRR29772605 | Pre-XDR-TB | lineage1.1.3.1;lineage3.1 | None | ERR1140762 | Sensitive | lineage3.1 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR29017220 | MDR-TB | lineage3.1 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | SRR3675481 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR3675464 | HR-TB | lineage2.1;lineage4.9;lineage6.3;lineage8 | None | ERR4553626 | MDR-TB | lineage3.1 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | SRR3675450 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR29096150 | Other | lineage4.9 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR2510623 | Pre-XDR-TB | lineage3.1 | pk | ERR2510590 | Pre-XDR-TB | lineage3.1 | pk | SRR29017014 | MDR-TB | lineage3.1 | None | SRR29097026 | Other | lineage4.9 | None | ERR5311096 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR29017013 | MDR-TB | lineage3.1 | None | ERR13265221 | Sensitive | lineage3.1 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR5311090 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4798579 | Sensitive | lineage3.1 | in | ERR294178 | Sensitive | lineage3.1 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR126600 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR29096410 | Other | lineage4.9 | None | ERR688021 | Pre-XDR-TB | lineage3.1 | None | ERR13284286 | MDR-TB | lineage4.1.2.1 | None | SRR6045952 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR29017464 | MDR-TB | lineage3.1 | None | ERR3276052 | Sensitive | lineage3.1 | nl | ERR387051 | Other | lineage4.9 | None | ERR031465 | MDR-TB | lineage3.1 | None | ERR4796676 | HR-TB | lineage3.1 | in | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR5311101 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6650242 | Sensitive | lineage3.1 | None | SRR28044388 | Sensitive | lineage3.1 | None | SRR4423140 | MDR-TB | lineage3.1 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | ERR4553611 | MDR-TB | lineage3.1 | None | ERR4553988 | MDR-TB | lineage3.1 | None | SRR29016833 | XDR-TB | lineage3.1 | None | ERR12141664 | Sensitive | lineage4.1.2.1 | None | ERR688023 | Pre-XDR-TB | lineage3.1 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR4553454 | MDR-TB | lineage3.1 | None | ERR212123 | Other | lineage4.9 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR4553811 | MDR-TB | lineage3.1 | None | ERR4811142 | RR-TB | None | ERR4811311 | Other | None | SRR29772542 | HR-TB | lineage3.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | SRR29017032 | MDR-TB | lineage3.1 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR3675561 | Other | M.canetti;lineage2.1;lineage4.9 | None | ERR8976043 | HR-TB | lineage2.2 | None | SRR18149469 | Sensitive | lineage3.1 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | SRR29096387 | Sensitive | M.canetti;lineage4.9 | None | ERR4553455 | MDR-TB | lineage3.1 | None | SRR3675518 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR29017407 | MDR-TB | lineage3.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR29055673 | Sensitive | lineage3.1 | None | SRR6325442 | HR-TB | lineage4.1.1;lineage4.9 | None | SRR6325447 | HR-TB | lineage4.1.1.1 | None | SRR29017641 | MDR-TB | lineage3.1 | None | ERR4553975 | XDR-TB | lineage3.1 | None | ERR4553836 | MDR-TB | lineage3.1 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4796678 | Sensitive | lineage3.1 | in | ERR4798517 | MDR-TB | lineage3.1 | in | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4797739 | Pre-XDR-TB | lineage3.1 | in | SRR29017707 | MDR-TB | lineage3.1 | None | ERR4796507 | Sensitive | lineage3.1 | in | ERR13265082 | Sensitive | lineage3.1 | None |
|---|
