SRR6046485
|
Other
|
lineage4.9
|
None
|
ERR4798262
|
HR-TB
|
La1.2.BCG
|
None
|
ERR3797014
|
Other
|
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9
|
None
|
ERR4796676
|
HR-TB
|
lineage3.1
|
in
|
ERR2510590
|
Pre-XDR-TB
|
lineage3.1
|
pk
|
ERR2510623
|
Pre-XDR-TB
|
lineage3.1
|
pk
|
SRR8552928
|
HR-TB
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR4798517
|
MDR-TB
|
lineage3.1
|
in
|
ERR126600
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR12142341
|
HR-TB
|
lineage2.1
|
None
|
SRR6046397
|
Other
|
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3
|
None
|
ERR13266158
|
Sensitive
|
lineage3.1
|
None
|
ERR6358837
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
ERR2704696
|
Sensitive
|
lineage3.1
|
None
|
ERR2704697
|
Sensitive
|
lineage3.1
|
None
|
SRR23961558
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR4553661
|
MDR-TB
|
lineage3.1
|
None
|
ERR181744
|
HR-TB
|
La3;lineage4.9
|
None
|
ERR4553663
|
MDR-TB
|
lineage3.1
|
None
|
SRR29017464
|
MDR-TB
|
lineage3.1
|
None
|
SRR28170764
|
Sensitive
|
lineage3.1
|
None
|
ERR031465
|
MDR-TB
|
lineage3.1
|
None
|
ERR4811075
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR29016848
|
MDR-TB
|
lineage3.1
|
None
|
ERR2693245
|
HR-TB
|
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9
|
None
|
SRR6650242
|
Sensitive
|
lineage3.1
|
None
|
SRR28044388
|
Sensitive
|
lineage3.1
|
None
|
ERR2704697_ERR2704675_ERR2704696
|
Sensitive
|
lineage3.1
|
None
|
SRR21690790
|
Sensitive
|
lineage3.1
|
None
|
SRR2100324
|
MDR-TB
|
lineage3.1
|
None
|
ERR4553611
|
MDR-TB
|
lineage3.1
|
None
|
ERR551397
|
Sensitive
|
lineage3.1
|
de
|
SRR28045229
|
Pre-XDR-TB
|
lineage3.1
|
None
|
SRR3675216
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR6045219
|
HR-TB
|
lineage4.9
|
None
|
ERR161037
|
Other
|
lineage4.9
|
None
|
SRR6046720
|
HR-TB
|
lineage4.9;lineage9
|
None
|
SRR6046644
|
HR-TB
|
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3
|
None
|
SRR6458423
|
HR-TB
|
lineage2.2.1
|
None
|
SRR29096150
|
Other
|
lineage4.9
|
None
|
ERR4811311
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR18149469
|
Sensitive
|
lineage3.1
|
None
|
SRR6045399
|
Other
|
M.canetti;lineage4.9
|
None
|
ERR1023295
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.2.1
|
None
|
ERR323053
|
MDR-TB
|
La2;lineage4.9;lineage9
|
None
|
SRR2100981
|
Sensitive
|
lineage3.1
|
None
|
SRR3675464
|
HR-TB
|
lineage2.1;lineage4.9;lineage6.3;lineage8
|
None
|
SRR6045948
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR29017680
|
MDR-TB
|
lineage3.1
|
None
|
ERR4553626
|
MDR-TB
|
lineage3.1
|
None
|
ERR4816466
|
HR-TB
|
lineage4.9
|
None
|
ERR13265531
|
Sensitive
|
lineage3.1
|
None
|
ERR2513554
|
Sensitive
|
lineage3.1
|
gb
|
ERR176751
|
Other
|
lineage4.9
|
None
|
ERR4553715
|
MDR-TB
|
lineage3.1
|
None
|
SRR6045887
|
Other
|
La1.7;M.canetti;lineage4.9
|
None
|
ERR294178
|
Sensitive
|
lineage3.1
|
None
|
SRR3675554
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR12141665
|
HR-TB
|
lineage4.1.2.1
|
None
|
SRR28045555
|
MDR-TB
|
lineage3.1
|
None
|
SRR6325448
|
HR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
SRR6325442
|
HR-TB
|
lineage2.1;lineage4.1.1.1;lineage6.3
|
None
|
SRR28046024
|
Other
|
lineage3.1
|
None
|
SRR29772492
|
MDR-TB
|
lineage3.1
|
None
|
SRR10808730
|
Other
|
lineage4.9
|
None
|
SRR30182298
|
Sensitive
|
lineage3.1
|
None
|
SRR6045555
|
Other
|
lineage4.9
|
None
|
ERR9786604
|
Other
|
|
None
|
ERR4798579
|
Sensitive
|
lineage3.1
|
in
|
ERR114476
|
MDR-TB
|
lineage3.1
|
None
|
SRR29016823
|
Pre-XDR-TB
|
lineage3.1
|
None
|
ERR9786694
|
Other
|
lineage4.1.2.1
|
None
|
SRR6045952
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR3675508
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR4821076
|
Sensitive
|
lineage3.1
|
gb
|
ERR3283024
|
Other
|
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9
|
None
|
ERR13266157
|
Sensitive
|
lineage3.1
|
None
|
ERR2693257
|
Other
|
La1.6;La3;M.canetti;lineage4.8.1;lineage4.9
|
None
|
SRR29772542
|
HR-TB
|
lineage3.1
|
None
|
ERR4553498
|
MDR-TB
|
lineage3.1
|
None
|
ERR387051
|
Other
|
lineage4.9
|
None
|
SRR3675520
|
Other
|
La1.7.X-unk4;lineage4.9
|
None
|
ERR5311081
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR5311101
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR4423140
|
MDR-TB
|
lineage3.1
|
None
|
ERR2704675
|
Sensitive
|
lineage3.1
|
None
|
ERR4553988
|
MDR-TB
|
lineage3.1
|
None
|
ERR4796507
|
Sensitive
|
lineage3.1
|
in
|
ERR12141664
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR4811105
|
HR-TB
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR6046783
|
Other
|
La1.7;M.canetti;lineage4.9
|
None
|
ERR13265628
|
Sensitive
|
lineage3.1
|
None
|
SRR6797475
|
Other
|
lineage3.1
|
None
|
ERR1140781
|
Sensitive
|
lineage3.1
|
None
|
ERR9786617
|
Other
|
lineage4.1.1.1
|
None
|
ERR3797036
|
HR-TB
|
lineage2.1;lineage4.1.4;lineage4.9
|
None
|
ERR1140762
|
Sensitive
|
lineage3.1
|
None
|
SRR6325447
|
MDR-TB
|
lineage2.1;lineage4.1.1.1;lineage6.3
|
None
|
ERR11043376
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR212121
|
HR-TB
|
lineage4.9;lineage6.3
|
None
|
ERR4796678
|
Sensitive
|
lineage3.1
|
in
|
SRR29017220
|
MDR-TB
|
lineage3.1
|
None
|
SRR6325444
|
MDR-TB
|
M.canetti;lineage2.1;lineage6.3
|
None
|
SRR3675518
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
ERR4553836
|
MDR-TB
|
lineage3.1
|
None
|
ERR5311096
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR5311102
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR13265059
|
Sensitive
|
lineage3.1
|
None
|
SAMEA4791099
|
Sensitive
|
lineage3.1
|
us
|
ERR5311090
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR13265082
|
Sensitive
|
lineage3.1
|
None
|
ERR234111
|
MDR-TB
|
lineage3.1
|
np
|
SRR11662690
|
HR-TB
|
lineage4.9
|
None
|
SRR26159047
|
Other
|
lineage4.6.3;lineage4.9
|
None
|
ERR1034589
|
Pre-XDR-TB
|
lineage3.1
|
pk
|
ERR1034591
|
Pre-XDR-TB
|
lineage3.1
|
pk
|
ERR6359045
|
Other
|
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3
|
None
|
SRR30182500
|
HR-TB
|
lineage3.1
|
None
|
SRR30182593
|
Sensitive
|
lineage3.1
|
None
|
ERR124652
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR6046295
|
HR-TB
|
lineage4.2;lineage4.9
|
None
|
SRR29017013
|
MDR-TB
|
lineage3.1
|
None
|
SRR1180226
|
HR-TB
|
lineage4.9
|
None
|
ERR736865
|
HR-TB
|
lineage4.3.2;lineage4.9
|
None
|
ERR736835
|
HR-TB
|
La1.7;M.canetti;lineage4.9
|
None
|
SRR3675558
|
HR-TB
|
M.canetti;lineage4.1.1.3;lineage6.3;lineage8
|
None
|
SRR3675568
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8
|
None
|
ERR502524
|
HR-TB
|
lineage4.9;lineage6.3
|
None
|
SRR29096410
|
Other
|
lineage4.9
|
None
|
ERR688021
|
Pre-XDR-TB
|
lineage3.1
|
None
|
ERR234232
|
Sensitive
|
lineage3.1
|
None
|
ERR13284286
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR25827418
|
XDR-TB
|
lineage3.1;lineage9
|
None
|
ERR4188342
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR11252599
|
Other
|
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3
|
None
|
SRR29097026
|
Other
|
lineage4.9
|
None
|
ERR4810741
|
HR-TB
|
La3;lineage2.1;lineage6.3
|
None
|
SRR3675571
|
HR-TB
|
M.canetti;lineage4.2;lineage4.9
|
None
|
ERR3797044
|
Other
|
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9
|
None
|
SRR6046514
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR5311083
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4811022
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3797017
|
HR-TB
|
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9
|
None
|
ERR4811142
|
RR-TB
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR5311100
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4800050
|
Sensitive
|
lineage3.1
|
in
|
ERR2693231
|
Other
|
La1.6;La3;lineage4.6.4;lineage4.9
|
None
|
SRR6325445
|
HR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
SRR29772605
|
Pre-XDR-TB
|
lineage1.1.3.1;lineage3.1
|
None
|
ERR688023
|
Pre-XDR-TB
|
lineage3.1
|
None
|
ERR3276052
|
Sensitive
|
lineage3.1
|
nl
|
SRR6046133
|
HR-TB
|
lineage4.9
|
None
|
ERR4553454
|
MDR-TB
|
lineage3.1
|
None
|
ERR4553811
|
MDR-TB
|
lineage3.1
|
None
|
ERR4797739
|
Pre-XDR-TB
|
lineage3.1
|
in
|
ERR4553733
|
MDR-TB
|
lineage3.1
|
None
|
ERR3283020
|
HR-TB
|
La1.6;La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR3675481
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR3675561
|
Other
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR13265172
|
Sensitive
|
lineage3.1
|
None
|
ERR4553455
|
MDR-TB
|
lineage3.1
|
None
|
SRR3675450
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
ERR4553975
|
XDR-TB
|
lineage3.1
|
None
|
ERR4831117
|
HR-TB
|
lineage4.9;lineage7
|
None
|
ERR11067316
|
HR-TB
|
lineage3.1
|
None
|
ERR13265221
|
Sensitive
|
lineage3.1
|
None
|
SRR6045785
|
MDR-TB
|
lineage4.2;lineage4.8.1;lineage4.9
|
None
|
SRR3675234
|
Other
|
La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9
|
None
|
ERR8976043
|
HR-TB
|
lineage2.1;lineage2.2;lineage6.3
|
None
|