Rv0001 - c.1008G>A
Drug resistance types
7 Sensitive
8 RR-TB
82 HR-TB
43 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
101 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 38 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 17 |
| La2;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 12 |
| lineage4 | 2 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 5 |
| La3;M.canetti;lineage2.1;lineage4.9 | 6 |
| 18 | |
| lineage3 | 2 |
| La3;lineage4.3.4 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| M.canetti;lineage4.3.1;lineage4.9 | 1 |
| lineage4.7 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.9;lineage9 | 2 |
| lineage4.9;lineage6.3 | 8 |
| lineage4.3.2 | 1 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 9 |
| La2;lineage4.9;lineage9 | 1 |
| La1.7.1;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage5.2 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage2.1 | 2 |
| M.canetti;lineage2.1;lineage6.3 | 2 |
| lineage3.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.2;lineage4.9 | 3 |
| lineage2.1;lineage4.1.1.1;lineage6.3 | 2 |
| lineage4.9;lineage7 | 2 |
| M.canetti;lineage4.9 | 2 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| lineage4.1.2.1 | 3 |
| La1.2.BCG;La1.8.1 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| lineage4.5 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage2 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage2.2.1 | 10 |
| La3;lineage4.9 | 3 |
| lineage2.1;lineage6.3 | 2 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 3 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage1;lineage4.9 | 1 |
| lineage4.6.2.2 | 3 |
| lineage3.1.2.2 | 1 |
| lineage3.1.1 | 1 |
| lineage4.1.1.1 | 2 |
| La3 | 2 |
| La3;lineage4.8 | 2 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 3 |
| La1.7;lineage4.9 | 2 |
| lineage4.3.2;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| lineage6.3.1 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage2.2.2 | 1 |
| M.canetti;lineage1 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| lineage4.1.3 | 2 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| lineage4.8.1 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | 1 |
| lineage4.4.1.1 | 1 |
| lineage2.1;lineage2.2;lineage6.3 | 1 |
| La1.2 | 1 |
| lineage2.2.2;lineage4 | 1 |
| La1.7.1 | 1 |
| lineage6.1.3 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage3.1.2.1;lineage3.1.2.2 | 1 |
| lineage4.3.4 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 243 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR3797069 | Other | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR1173355 | Other | lineage4.9 | None | ERR124651 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR5311101 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR323064 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6789626 | Other | None | ERR4797588 | MDR-TB | lineage3 | None | ERR161039 | HR-TB | La3;lineage4.3.4 | None | ERR4798504 | RR-TB | lineage3 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR9119138 | RR-TB | M.canetti;lineage4.3.1;lineage4.9 | None | ERR4829917 | HR-TB | lineage4.7 | it | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | SRR3675481 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675236 | Other | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR5311089 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR126618 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR9117709 | Other | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1184294 | Other | lineage4.9 | None | SRR3675320 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | None | ERR323033 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9786843 | Other | None | SRR6325442 | HR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR9787197 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR124652 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR126600 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR12142341 | HR-TB | lineage2.1 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | SRR3675487 | Other | M.canetti;lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR3675558 | HR-TB | M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | None | SRR1640750 | Other | None | SRR3675568 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | ERR176651 | Other | lineage4.9 | None | ERR4188342 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3468607 | Other | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR3675275 | Other | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR387051 | Other | lineage4.9 | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR161034 | HR-TB | lineage4.3.4.2.1 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR5311083 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR7496517 | Other | None | ERR5311100 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR323115 | Sensitive | lineage4.9 | None | SRR6045526 | Other | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR3283016 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR1196474 | Other | lineage3.1.1 | None | SRR1196546 | Other | lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR3283044 | Other | lineage4 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR1172728 | RR-TB | La3 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR7496509 | Other | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR12015083 | Other | La3;lineage4.8 | None | ERR5311096 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | ERR5311090 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR1873393 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR386953 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR1184381 | MDR-TB | None | SRR3675221 | Other | lineage4.9 | None | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR987722 | MDR-TB | None | ERR212001 | HR-TB | None | ERR234659 | Other | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR9786671 | Other | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR1173633 | Other | lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR3675572 | Other | None | ERR3797016 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4407463 | HR-TB | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1196583 | Other | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR18213713 | HR-TB | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR3675506 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR126608 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR323040 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR18910194 | HR-TB | lineage2.2.2 | None | SRR6046066 | Other | lineage4.9 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | ERR4816999 | Other | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6325447 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR5311082 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR2229143 | RR-TB | lineage4.9 | None | SRR3675464 | HR-TB | lineage2.1;lineage4.9;lineage6.3;lineage8 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | SRR3675518 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR4812155 | Other | lineage4.9 | None | ERR5311099 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR1172817 | Other | La3 | None | SRR3675450 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR12708389 | MDR-TB | lineage4.8.1 | None | SRR29017461 | Other | La3;lineage4.9 | None | SRR3675494 | RR-TB | lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3283017 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR8976043 | HR-TB | lineage2.1;lineage2.2;lineage6.3 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR7496472 | Other | lineage4.9 | None | SRR23961549 | Other | La1.2 | None | ERR3797070 | Other | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR3675554 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6789621 | Other | lineage4.9 | None | SRR28119752 | Other | lineage4.9 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | ERR323047 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR7240492 | HR-TB | La1.7.1 | None | ERR9786604 | Other | None | SRR6046382 | Sensitive | lineage2.2.1 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | ERR5311098 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR6358837 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR9787165 | Other | lineage6.1.3 | None | SRR1173778 | Other | lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | ERR987729 | HR-TB | lineage3.1.2.1;lineage3.1.2.2 | None | ERR4817893 | Other | La3;lineage4.8 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR6046514 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None |
|---|
