lineage | Count |
---|---|
51 | |
lineage4.5 | 1 |
lineage4.1.1 | 2 |
lineage4.9;La3 | 1 |
lineage4.9 | 5 |
lineage3;lineage2.2.1 | 1 |
lineage2.2.1 | 2 |
lineage4.4.1.1 | 1 |
lineage4.8;La3 | 1 |
La1.8.1 | 1 |
lineage2.2 | 1 |
lineage4.1.2.1 | 6 |
lineage4.8 | 3 |
lineage4 | 4 |
La2 | 1 |
lineage4.7 | 1 |
La1 | 1 |
lineage4.1.3 | 2 |
lineage2 | 1 |
lineage3 | 1 |
lineage4.6.1.1 | 1 |
lineage1.1.2 | 1 |
lineage6.3.1 | 1 |
lineage4.6.2.2 | 1 |
lineage6 | 1 |
spoligotype | Count |
---|---|
None | 92 |
ID | Drug resistance | Lineage | Country iso2 | SRR25827682 | Other | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19303884 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | SRR26399973 | Other | lineage4.9;La3 | None | ERR4815604 | HR-TB | None | SRR26159043 | Other | lineage4.9 | None | SRR25827497 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675465 | HR-TB | None | ERR158583 | HR-TB | None | SRR3675236 | HR-TB | None | SRR3675221 | HR-TB | None | SRR3675502 | Other | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4817037 | Other | lineage4.9 | None | SRR3675572 | Other | None | ERR4816999 | Other | None | ERR212001 | HR-TB | None | SRR3675550 | Other | None | ERR4817060 | RR-TB | None | ERR234659 | HR-TB | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR4818021 | Other | La1.8.1 | None | ERR4816585 | Other | lineage2.2 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR3275201 | Sensitive | lineage4.8 | nl | ERR4819280 | Sensitive | lineage4 | None | SRR6046066 | HR-TB | None | SRR5341418 | Other | None | ERR4819781 | Other | lineage2.2.1 | None | ERR2446570 | Sensitive | lineage4.8 | nl | SRR6044790 | HR-TB | None | SRR5341302 | HR-TB | None | SRR5341333 | HR-TB | None | SRR6044838 | Other | lineage4.9 | None | SRR6046362 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6045399 | Other | None | SRR6046540 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6789626 | Other | None | ERR502889 | Other | None | ERR502524 | HR-TB | La2 | None | ERR502532 | HR-TB | None | SRR7496523 | Other | lineage4.7 | None | SRR7496517 | Other | None | SRR7496509 | Other | None | ERR027293 | Other | None | ERR323043 | HR-TB | None | SRR7535086 | Other | None | ERR067681 | HR-TB | None | ERR1023525 | HR-TB | lineage4 | None | ERR3439432 | Other | None | ERR133986 | HR-TB | None | ERR3283051 | Other | lineage4.9 | None | ERR3283010 | Other | La1 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283027 | HR-TB | None | ERR3283036 | HR-TB | None | ERR403298 | HR-TB | lineage4 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3797069 | Other | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4407463 | HR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR702406 | HR-TB | None | ERR4798406 | HR-TB | None | ERR4800341 | Other | lineage3 | None | ERR5336148 | Other | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6359045 | HR-TB | None | ERR736874 | HR-TB | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9117709 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786604 | Other | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6 | None | ERR9786671 | Other | None | SRR1169194 | Other | None | ERR9787197 | Other | None | SRR1172234 | Other | None | SRR12416824 | HR-TB | None |
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