Rv0006 - p.Asp488Glu
Drug resistance types
66 Sensitive
27 RR-TB
24 HR-TB
113 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
31 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 24 |
| La3;M.canetti;lineage2.1;lineage4.9 | 10 |
| lineage3 | 108 |
| M.canetti;lineage4.9 | 5 |
| M.canetti;lineage2.1;lineage4.9 | 24 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| lineage4.3.3 | 2 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 6 |
| La1.7;lineage4.9 | 6 |
| 2 | |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage2.1;lineage4.9 | 3 |
| lineage4.2;lineage4.9 | 3 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| lineage2.2.1 | 2 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.3.2.1 | 1 |
| La1.7;M.canetti;lineage4.9 | 4 |
| La1.2;La1.8.1 | 1 |
| M.canetti;lineage4.3.1;lineage4.9 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.1.2.1 | 3 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| lineage2.1;lineage4.3.2 | 1 |
| La1.7 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | 1 |
| La1.7.1 | 1 |
| La3;M.canetti;lineage3.1 | 1 |
| lineage2.2 | 2 |
| La3;M.canetti;lineage4.9 | 1 |
| La1;lineage4.9 | 1 |
| lineage2.1;lineage2.2;lineage6.3 | 1 |
| lineage6.1.1 | 2 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 2 |
| lineage4.3.4.2 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| lineage4.8 | 1 |
| La1.8.1 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 4 |
| lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage2.1;lineage4.1.1.1;lineage6.3 | 2 |
| lineage4.1.1.3 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | 1 |
| lineage1.1 | 1 |
| lineage1.1.3.1 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La1.2.BCG | 1 |
| M.canetti;lineage2.1;lineage4 | 1 |
| La3;M.canetti;lineage2.1;lineage3.1 | 1 |
| lineage4.9;lineage6.3 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| La2;lineage4.9;lineage9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 262 |
Geographic prevalence
Country level data for this variant is available for 20 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR13861400 | Other | lineage4.9 | None | ERR323055 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR24223017 | Sensitive | lineage3 | None | ERR3639822 | MDR-TB | lineage3 | None | SRR6045685 | Sensitive | lineage3 | gb | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | ERR3470664 | MDR-TB | lineage3 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR10849244 | Sensitive | lineage3 | None | ERR3468607 | RR-TB | lineage4.9 | None | ERR11081078 | MDR-TB | lineage3 | None | SRR21690993 | Sensitive | lineage3 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR3275673 | Sensitive | lineage3 | nl | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | ERR126608 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR403348 | Sensitive | lineage3 | None | SRR3675515 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311083 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR7069258 | HR-TB | lineage3 | None | ERR5311090 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR2446205 | Sensitive | lineage3 | nl | SRR24223011 | Other | lineage3 | None | SRR6046485 | Other | lineage4.9 | None | ERR3283021 | MDR-TB | lineage4.9 | None | SRR3675464 | MDR-TB | lineage2.1;lineage4.9;lineage6.3;lineage8 | None | ERR9119096 | RR-TB | lineage4.3.3 | None | SRR3675568 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | None | SRR3675554 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | SRR1640750 | RR-TB | None | ERR3275913 | Sensitive | lineage3 | nl | ERR323040 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR6358979 | HR-TB | lineage4.9 | None | ERR11081136 | MDR-TB | lineage3 | None | ERR278594 | MDR-TB | lineage2.1;lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | SRR24222979 | Sensitive | lineage3 | None | SRR5341330 | Other | lineage4.9 | None | SRR6046295 | MDR-TB | lineage4.2;lineage4.9 | None | SRR21690982 | HR-TB | lineage3 | None | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR11067952 | Sensitive | lineage3 | None | ERR3470671 | Sensitive | lineage3 | None | ERR6397205 | MDR-TB | lineage3 | None | ERR11050668 | Sensitive | lineage3 | None | ERR124651 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR3275572 | Sensitive | lineage3 | nl | ERR5311101 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675558 | MDR-TB | M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | None | ERR3470577 | Sensitive | lineage3 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | SRR27450106 | MDR-TB | lineage3 | None | ERR2512948 | Sensitive | lineage3 | gb | ERR2693228 | RR-TB | lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR26159047 | RR-TB | lineage4.6.3;lineage4.9 | None | ERR2517498 | Sensitive | lineage3 | nl | SRR3675545 | RR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675444 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR3797016 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323060 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR3470677 | MDR-TB | lineage3 | None | ERR3470653 | Sensitive | lineage3 | None | SRR1166804 | MDR-TB | lineage3 | None | ERR386953 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | SRR7240033 | Other | La1.2;La1.8.1 | None | ERR323064 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR3470687 | MDR-TB | lineage3 | None | ERR5979463 | MDR-TB | lineage3 | None | ERR9119138 | RR-TB | M.canetti;lineage4.3.1;lineage4.9 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR3470662 | MDR-TB | lineage3 | None | ERR323058 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR24223008 | Sensitive | lineage3 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | SRR3675481 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675571 | MDR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR7517713 | RR-TB | lineage3 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | ERR3470665 | MDR-TB | lineage3 | None | ERR4818493 | Sensitive | lineage3 | None | SRR6045290 | RR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3470700 | MDR-TB | lineage3 | None | ERR3470672 | Sensitive | lineage3 | None | ERR2517574 | Sensitive | lineage3 | nl | ERR9125417 | Sensitive | lineage3 | None | SRR6044815 | RR-TB | lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR3470603 | Sensitive | lineage3 | None | ERR11050472 | Sensitive | lineage3 | None | ERR772255 | MDR-TB | lineage2.1;lineage4.3.2 | None | SRR3675222 | Other | La1.7 | None | ERR4828872 | RR-TB | lineage4.2;lineage4.9 | None | ERR11081877 | Sensitive | lineage3 | None | SRR1167099 | MDR-TB | lineage3 | None | ERR3283017 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | None | ERR294266 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR5979458 | MDR-TB | lineage3 | None | SRR6045952 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR3275581 | Sensitive | lineage3 | nl | SRR24222981 | Sensitive | lineage3 | None | ERR323033 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR386931 | Sensitive | lineage3 | None | ERR6359082 | Other | lineage4.9 | None | SRR7240492 | MDR-TB | La1.7.1 | None | SRR1165369 | MDR-TB | lineage3 | None | ERR323054 | MDR-TB | La3;M.canetti;lineage3.1 | None | SRR1162836 | MDR-TB | lineage3 | None | SRR27450566 | Sensitive | lineage3 | None | SRR24223023 | Other | lineage3 | None | SRR20970016 | Other | lineage2.2 | None | ERR987722 | MDR-TB | None | ERR2693229 | RR-TB | La3;M.canetti;lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | SRR7070665 | HR-TB | lineage3 | None | ERR11068101 | Sensitive | lineage3 | None | ERR266542 | Sensitive | lineage3 | None | ERR8976043 | MDR-TB | lineage2.1;lineage2.2;lineage6.3 | None | ERR2693242 | RR-TB | lineage2.1;lineage4.9 | None | SRR21689663 | Sensitive | lineage3 | None | SRR12882160 | RR-TB | lineage3 | None | ERR9787014 | RR-TB | lineage6.1.1 | None | SRR3675322 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | ERR124652 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR7070612 | Sensitive | lineage3 | None | SRR5535933 | Other | lineage4.9 | None | ERR9786592 | Other | lineage4.3.4.2 | None | ERR4821053 | RR-TB | lineage3 | None | ERR4816185 | Sensitive | lineage3 | None | ERR3470675 | MDR-TB | lineage3 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR11068328 | Sensitive | lineage3 | None | SRR3675561 | RR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3470560 | Sensitive | lineage3 | None | ERR5311098 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR323063 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR3675487 | MDR-TB | M.canetti;lineage4.9 | None | SRR21690100 | Sensitive | lineage3 | None | SRR6045555 | Other | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | ERR9125419 | Sensitive | lineage3 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR5311089 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797023 | MDR-TB | La1.8.1 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | SRR12882258 | Sensitive | lineage3 | None | ERR3283016 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR176658 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675486 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR4815687 | Sensitive | lineage3 | gb | SRR23961558 | RR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR6325447 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR4816551 | MDR-TB | lineage4.1.1.3 | None | SRR22048356 | Sensitive | lineage3 | None | ERR3470684 | Sensitive | lineage3 | None | ERR3470655 | Sensitive | lineage3 | None | SRR6325442 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR3470640 | MDR-TB | lineage3 | None | ERR126600 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR7069254 | Sensitive | lineage3 | None | ERR126618 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | ERR11082121 | Sensitive | lineage3 | None | ERR4820325 | MDR-TB | lineage3 | gb | ERR5311099 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3275489 | Sensitive | lineage3 | nl | ERR3797047 | MDR-TB | lineage4.9 | None | ERR5311097 | Other | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR23340067 | MDR-TB | lineage2.2.1 | None | ERR11044093 | Other | lineage3 | None | SRR3675450 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR24223015 | Sensitive | lineage3 | None | SRR21689839 | Sensitive | lineage3 | None | ERR11082613 | HR-TB | lineage3 | None | ERR3470551 | MDR-TB | lineage3 | None | ERR4188350 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR2517483 | Sensitive | lineage3 | nl | ERR5908228 | RR-TB | lineage4.3.3 | None | ERR2446373 | Sensitive | lineage3 | nl | SRR3675508 | MDR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675320 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | None | ERR3077978 | RR-TB | lineage1.1 | None | ERR473314 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | SRR24223004 | Sensitive | lineage3 | None | ERR8479578 | HR-TB | lineage1.1.3.1 | None | ERR4822436 | Sensitive | lineage3 | de | ERR3470661 | MDR-TB | lineage3 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR4188342 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3470702 | MDR-TB | lineage3 | None | SRR6325445 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR16058315 | Sensitive | lineage3 | None | ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675441 | RR-TB | lineage4.9 | None | ERR4798262 | HR-TB | La1.2.BCG | None | SRR3675449 | RR-TB | M.canetti;lineage4.9 | None | SRR21690159 | Sensitive | lineage3 | None | SRR21690825 | HR-TB | lineage3 | None | SRR6046514 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR2693239 | RR-TB | M.canetti;lineage2.1;lineage4 | None | ERR6397206 | MDR-TB | lineage3 | None | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | ERR323034 | MDR-TB | La3;M.canetti;lineage2.1;lineage3.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | ERR5311100 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR21689893 | Sensitive | lineage3 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | ERR11050610 | HR-TB | lineage3 | None | SRR6325448 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR2446545 | Sensitive | lineage3 | nl | SRR2100953 | Sensitive | lineage3 | None | ERR323047 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR3470667 | MDR-TB | lineage3 | None | SRR3675506 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR3470670 | MDR-TB | lineage3 | None | SRR27450622 | Sensitive | lineage3 | None | ERR3275881 | HR-TB | lineage3 | nl | ERR3799304 | RR-TB | lineage6.1.1 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | ERR11067628 | Sensitive | lineage3 | None | ERR3276107 | HR-TB | lineage3 | nl | ERR11049157 | Other | lineage3 | None | SRR24223006 | Sensitive | lineage3 | None | ERR5311096 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR1873393 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311082 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | ERR5917710 | RR-TB | lineage4.1.2.1 | None | ERR502524 | MDR-TB | lineage4.9;lineage6.3 | None | ERR11042998 | Sensitive | lineage3 | None | SRR7070561 | Sensitive | lineage3 | None | ERR2446566 | Other | lineage4.9 | None | ERR736865 | MDR-TB | lineage4.3.2;lineage4.9 | None | SRR16058317 | Sensitive | lineage3 | None | SAMN02414938 | MDR-TB | lineage3 | se | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR323107 | HR-TB | lineage4.9 | None | ERR6358837 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR6045948 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR3675518 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR2446294 | Sensitive | lineage3 | nl | SRR7517730 | MDR-TB | lineage3 | None | ERR278572 | Sensitive | lineage3 | None |
|---|
