SRR3675539
|
MDR-TB
|
lineage4.9;lineage7
|
None
|
ERR3797044
|
Other
|
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9
|
None
|
SRR13423649
|
Other
|
lineage2.2.1
|
None
|
SRR3675322
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.9
|
None
|
ERR5311081
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR124652
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR5535933
|
Other
|
lineage4.9
|
None
|
ERR2026695
|
MDR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3
|
None
|
ERR124651
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3
|
None
|
ERR3797017
|
HR-TB
|
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9
|
None
|
ERR4821053
|
RR-TB
|
lineage3
|
None
|
SRR6046362
|
MDR-TB
|
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9
|
None
|
ERR5311100
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4820773
|
HR-TB
|
lineage4.9
|
None
|
SRR3675501
|
Other
|
La1.7;lineage4.9
|
None
|
SRR3675561
|
RR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR3675455
|
Sensitive
|
lineage4.9
|
None
|
SRR6325448
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
SRR1180226
|
HR-TB
|
lineage4.9
|
None
|
ERR2693231
|
HR-TB
|
La1.6;La3;lineage4.6.4;lineage4.9
|
None
|
ERR5311089
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR5341345
|
Sensitive
|
lineage4.9
|
None
|
ERR323060
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR3675234
|
HR-TB
|
La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9
|
None
|
ERR3283016
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR16156817
|
Other
|
lineage4.9
|
None
|
ERR3797014
|
HR-TB
|
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9
|
None
|
ERR176658
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR5311078
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR038268
|
MDR-TB
|
La3;M.canetti;lineage4.8;lineage4.9
|
None
|
ERR4811031
|
Other
|
lineage4.5
|
None
|
ERR400336
|
Sensitive
|
lineage4.9
|
None
|
ERR4811030
|
Other
|
lineage4.9
|
None
|
ERR5311096
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR5341461
|
HR-TB
|
lineage4.9
|
None
|
ERR400326
|
Other
|
lineage4.9
|
None
|
ERR3283020
|
HR-TB
|
La1.6;La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR6325447
|
MDR-TB
|
lineage2.1;lineage4.1.1.1;lineage6.3
|
None
|
ERR323036
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR502524
|
MDR-TB
|
lineage4.9;lineage6.3
|
None
|
SRR6458421
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1035122
|
HR-TB
|
lineage4.9
|
None
|
ERR3283047
|
Sensitive
|
La3;lineage4.9
|
None
|
ERR3273109
|
HR-TB
|
lineage4
|
None
|
ERR1035162
|
MDR-TB
|
M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9
|
None
|
ERR1023295
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.2.1
|
None
|
ERR4769474
|
HR-TB
|
lineage4.9
|
None
|
ERR6358837
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
ERR5311079
|
MDR-TB
|
La1.6;La3;M.canetti;lineage4.2;lineage4.9
|
None
|
SRR6045948
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3468544
|
RR-TB
|
lineage2.1;lineage4.9
|
None
|
ERR4816478
|
HR-TB
|
lineage4
|
None
|
ERR4812155
|
Other
|
lineage4.9
|
None
|
SRR14066533
|
RR-TB
|
lineage1.1.1
|
None
|
SRR6044815
|
RR-TB
|
lineage4.9
|
None
|
ERR323055
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR6045519
|
MDR-TB
|
M.canetti;lineage4.9
|
None
|
ERR323041
|
MDR-TB
|
M.canetti;lineage2.1
|
None
|
SRR6044835
|
Other
|
lineage4.9
|
None
|
ERR3468607
|
RR-TB
|
lineage4.9
|
None
|
ERR4188350
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR3675517
|
Other
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR6358991
|
HR-TB
|
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3
|
None
|
SRR3675515
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR3675243
|
MDR-TB
|
lineage4.9
|
None
|
SRR6045952
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR5311083
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR5311090
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR736834
|
HR-TB
|
lineage4.9
|
None
|
ERR473314
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR5341299
|
HR-TB
|
lineage4.9
|
None
|
ERR323054
|
MDR-TB
|
La3;M.canetti;lineage3.1
|
None
|
ERR323038
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR3675554
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR3283025
|
MDR-TB
|
La1.7;lineage4.9
|
None
|
ERR323040
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR6866547
|
Other
|
La1.7;lineage4.9;lineage6
|
None
|
ERR4188342
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR2693229
|
RR-TB
|
La3;M.canetti;lineage4.9
|
None
|
SRR1175500
|
Sensitive
|
lineage4.1.1.3;lineage4.9
|
None
|
ERR736835
|
HR-TB
|
La1.7;M.canetti;lineage4.9
|
None
|
SRR3675385
|
Other
|
La1.7;lineage4.9
|
None
|
ERR3797087
|
Sensitive
|
lineage4.9
|
None
|
ERR4800341
|
HR-TB
|
lineage3
|
None
|
ERR4810624
|
MDR-TB
|
lineage2.2
|
None
|
ERR5311091
|
Other
|
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3
|
None
|
ERR8976043
|
MDR-TB
|
lineage2.1;lineage2.2;lineage6.3
|
None
|
ERR702405
|
HR-TB
|
lineage4.9
|
None
|
ERR3797079
|
Sensitive
|
lineage4.9
|
None
|
ERR400320
|
Sensitive
|
lineage4.9
|
None
|
SRR20970043
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1159378
|
Other
|
lineage4.9
|
None
|
ERR323034
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage3.1
|
None
|
SRR1792478
|
HR-TB
|
La1.7.1
|
None
|
SRR3675492
|
Other
|
La1.7;lineage4.9
|
None
|
ERR323063
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3283024
|
HR-TB
|
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9
|
None
|
ERR2026698
|
MDR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3
|
None
|
ERR4799025
|
Other
|
lineage4.8
|
None
|
SRR6046644
|
MDR-TB
|
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3
|
None
|
SRR6046482
|
Other
|
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3
|
None
|
ERR3797016
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR323047
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR3675506
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3797023
|
MDR-TB
|
La1.8.1
|
None
|
SRR5341384
|
HR-TB
|
lineage4.9
|
None
|
SRR1174897
|
MDR-TB
|
lineage4.9;lineage9
|
None
|
ERR400345
|
Other
|
lineage4.9
|
None
|
ERR386953
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR3675461
|
RR-TB
|
lineage4.9
|
None
|
ERR124636
|
HR-TB
|
lineage4.9
|
None
|
SRR3675267
|
Other
|
La1.7;lineage4.9
|
None
|
ERR4798648
|
MDR-TB
|
lineage3.1.2.2
|
None
|
ERR1873393
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR10808805
|
Other
|
La1;lineage4.9
|
None
|
SRR3675481
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR4815441
|
HR-TB
|
lineage4.9
|
None
|
SRR5341323
|
Sensitive
|
lineage4.9
|
None
|
ERR4798406
|
MDR-TB
|
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3
|
None
|
ERR736865
|
MDR-TB
|
lineage4.3.2;lineage4.9
|
None
|
ERR212121
|
HR-TB
|
lineage4.9;lineage6.3
|
None
|
SRR5341387
|
Other
|
lineage4.9
|
None
|
SRR14801759
|
MDR-TB
|
La1.7;lineage4.9
|
None
|
ERR2693230
|
HR-TB
|
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9
|
None
|
ERR1034652
|
Other
|
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2
|
None
|
ERR4819877
|
HR-TB
|
lineage4.9
|
None
|
ERR126618
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR323039
|
MDR-TB
|
La2;lineage4.9
|
None
|
SRR3675387
|
Other
|
lineage4.9
|
None
|
ERR3797064
|
Other
|
La3;lineage4.9
|
None
|
ERR5311099
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4816656
|
Other
|
lineage4.9
|
None
|
SRR1180147
|
RR-TB
|
lineage2.2.1.1
|
None
|
SRR3675456
|
RR-TB
|
lineage4.9;lineage7
|
None
|
ERR323056
|
HR-TB
|
lineage4.4.1.2
|
None
|
SRR3675508
|
MDR-TB
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR1180172
|
RR-TB
|
lineage2.2.1
|
None
|
ERR4819422
|
HR-TB
|
lineage4.9
|
None
|
SRR1183106
|
RR-TB
|
lineage2.2.1.1
|
None
|
ERR4796929
|
Sensitive
|
lineage4.9
|
None
|
ERR2026697
|
MDR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3
|
None
|
ERR4814536
|
MDR-TB
|
M.canetti;lineage2.1;lineage3
|
None
|
ERR161037
|
HR-TB
|
lineage4.9
|
None
|
ERR736856
|
HR-TB
|
lineage4.9
|
None
|
ERR176560
|
HR-TB
|
La1.7;lineage4.9
|
None
|
ERR8479578
|
HR-TB
|
lineage1.1.3.1
|
None
|
ERR1063896
|
HR-TB
|
|
None
|
ERR4797474
|
Other
|
lineage4.9
|
None
|
ERR278594
|
MDR-TB
|
lineage2.1;lineage4.9
|
None
|
SRR6325445
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
SRR3675555
|
MDR-TB
|
lineage2.1;lineage4.9;lineage7
|
None
|
SRR3742665
|
HR-TB
|
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3
|
None
|
SRR6046460
|
MDR-TB
|
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9
|
None
|
ERR4798099
|
HR-TB
|
lineage4.9
|
None
|
ERR294248
|
MDR-TB
|
lineage2.1;lineage4.9
|
None
|
ERR2693245
|
HR-TB
|
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9
|
None
|
ERR5162090
|
RR-TB
|
lineage4.9
|
None
|
SRR9970980
|
HR-TB
|
lineage4.1.2
|
None
|
ERR473277
|
HR-TB
|
La3;M.canetti;lineage4.9
|
None
|
ERR5311101
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3797048
|
Other
|
La3;lineage4.9
|
None
|
ERR124642
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3
|
None
|
ERR5311098
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR3675231
|
MDR-TB
|
lineage4.9;lineage7
|
None
|
ERR3283031
|
Other
|
La3;lineage4.9
|
None
|
ERR387051
|
RR-TB
|
lineage4.9
|
None
|
SRR6046564
|
Sensitive
|
lineage4.9
|
None
|
SRR6046245
|
Other
|
lineage4.9
|
None
|
SRR5341300
|
HR-TB
|
lineage4.9
|
None
|
SRR3675545
|
RR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR3675495
|
RR-TB
|
lineage2.1;lineage4.9
|
None
|
ERR323064
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4797350
|
Sensitive
|
lineage1;lineage4.9
|
None
|
SRR3675486
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
SRR5341308
|
HR-TB
|
lineage4.9
|
None
|
ERR3797063
|
Other
|
La3;lineage4.9
|
None
|
ERR9119138
|
RR-TB
|
M.canetti;lineage4.3.1;lineage4.9
|
None
|
ERR3283011
|
Other
|
La3;lineage4.9
|
None
|
ERR323058
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR6046382
|
RR-TB
|
lineage2.2.1
|
None
|
ERR4816551
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR3675280
|
RR-TB
|
lineage4.9
|
None
|
SRR6325442
|
MDR-TB
|
lineage2.1;lineage4.1.1.1;lineage6.3
|
None
|
SRR3675522
|
Other
|
lineage4.9
|
None
|
SRR3675235
|
HR-TB
|
lineage4.9
|
None
|
ERR126600
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR6045290
|
RR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4817731
|
HR-TB
|
lineage4.9
|
None
|
SRR6325444
|
MDR-TB
|
M.canetti;lineage2.1;lineage6.3
|
None
|
SRR5341453
|
Other
|
lineage4.9
|
None
|
ERR3283014
|
Other
|
La3;lineage4.9
|
None
|
SRR3675518
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
SRR12416842
|
HR-TB
|
lineage4.9
|
None
|
SRR12708372
|
Sensitive
|
lineage4.9
|
None
|
ERR2026696
|
MDR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3
|
None
|
ERR4797313
|
Sensitive
|
lineage2.2.1
|
None
|
SRR3675246
|
Other
|
lineage4.9
|
None
|
ERR2693257
|
HR-TB
|
La1.6;La3;M.canetti;lineage4.8.1;lineage4.9
|
None
|
SRR3675450
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
ERR4797184
|
HR-TB
|
lineage4.9
|
None
|
SRR1158918
|
Other
|
lineage4.9
|
None
|
ERR5311102
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3283017
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9
|
None
|
ERR323044
|
HR-TB
|
lineage4.3.4.2.1
|
None
|
ERR502510
|
HR-TB
|
lineage4.9
|
None
|
ERR3283057
|
Sensitive
|
La3;lineage4.9
|
None
|
SRR3675320
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9
|
None
|
ERR323033
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3077978
|
RR-TB
|
lineage1.1
|
None
|
SRR1183144
|
RR-TB
|
lineage2.2.1
|
None
|
ERR4819241
|
Other
|
lineage4.9
|
None
|
SRR7240492
|
MDR-TB
|
La1.7.1
|
None
|
SRR3675505
|
Other
|
La1.7;M.canetti;lineage4.9
|
None
|
ERR502511
|
HR-TB
|
lineage4.9
|
None
|
ERR3283028
|
Other
|
La3;lineage4
|
None
|
ERR133986
|
MDR-TB
|
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7
|
None
|
SRR1640750
|
RR-TB
|
|
None
|
ERR234659
|
HR-TB
|
|
None
|
SRR28351339
|
MDR-TB
|
lineage4
|
None
|
ERR137286
|
Other
|
lineage4.9
|
None
|
ERR176766
|
MDR-TB
|
lineage2.1;lineage4.9
|
None
|
ERR1035239
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR3675441
|
RR-TB
|
lineage4.9
|
None
|
SRR9971114
|
Other
|
lineage2.2.1
|
None
|
ERR736872
|
HR-TB
|
lineage4.9
|
None
|
ERR212034
|
HR-TB
|
La1.7;lineage4.9
|
None
|
ERR779852
|
HR-TB
|
lineage4.9
|
None
|
SRR3675449
|
RR-TB
|
M.canetti;lineage4.9
|
None
|