Rv3596c - c.1923G>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
53 Sensitive
2 RR-TB
32 HR-TB
7 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
39 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 79 |
| lineage4.5 | 3 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage4.9;lineage6.3 | 2 |
| 4 | |
| lineage3.1.2.1 | 1 |
| lineage2.2.1 | 6 |
| La1.8.1 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.2;lineage4.9 | 1 |
| lineage4.3.4 | 1 |
| lineage4.3.3 | 1 |
| lineage4 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.9;lineage9 | 2 |
| lineage6.1.1 | 2 |
| lineage3.1.2.2 | 1 |
| lineage3 | 4 |
| lineage4.3 | 1 |
| lineage4.2.1 | 1 |
| La2;lineage4.9 | 1 |
| lineage4.1.2.1 | 1 |
| lineage4.1;lineage4.9 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| La1.7.1;lineage4.9 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage2.2.1.2 | 1 |
| lineage1.1.1 | 1 |
| M.canetti;lineage4.9 | 2 |
| lineage4.9;lineage7 | 1 |
| lineage1.1.1;lineage4 | 1 |
| lineage5.1.4 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage1;lineage4.9 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 135 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6046611 | Sensitive | lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR3675580 | Sensitive | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR6046492 | Other | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR4819051 | Sensitive | lineage4.9 | None | SRR3675548 | Sensitive | lineage4.9 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR4816548 | HR-TB | lineage4.5 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR752229 | Other | lineage4.5 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR12006550 | Sensitive | None | ERR176779 | HR-TB | lineage4.9 | None | ERR349298 | Sensitive | lineage4.9 | None | SRR6046564 | Sensitive | lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | SRR12708372 | Sensitive | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR3675441 | Other | lineage4.9 | None | SRR7236330 | Other | La1.8.1 | None | SRR12708416 | Sensitive | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR987722 | MDR-TB | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR6045503 | Sensitive | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR369158 | Other | lineage4.9 | None | ERR4798823 | HR-TB | None | SRR3675265 | Other | lineage4 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR3675279 | Sensitive | lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | SRR11662694 | Other | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR349299 | Other | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9786076 | Sensitive | lineage3 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR867542 | HR-TB | lineage4.3 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | SRR29096150 | Other | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR29097026 | Other | lineage4.9 | None | SRR3675477 | Sensitive | lineage4.9 | None | SRR29096410 | Other | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR1175496 | Sensitive | lineage4.9 | None | SRR5341296 | Sensitive | lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | SRR3675292 | Sensitive | lineage4.9 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR181887 | Other | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR2513259 | Other | lineage3 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | SRR1175508 | Sensitive | lineage4.9 | None | ERR4798504 | RR-TB | lineage3 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046245 | Other | lineage4.9 | None | ERR2514552 | Sensitive | lineage3 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR363499 | Sensitive | lineage4.9 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR3675387 | Other | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | ERR4812155 | Other | lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | ERR176751 | Other | lineage4.9 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | ERR176740 | Other | lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR349266 | Sensitive | lineage4.9 | None | SRR3675472 | Sensitive | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | SRR29097037 | Other | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None |
|---|
