lineage | Count |
---|---|
129 | |
lineage4 | 12 |
lineage4.9 | 9 |
lineage2.2.1 | 5 |
lineage4.1.2.1 | 10 |
lineage2.2.1.1 | 2 |
lineage2.2 | 5 |
La2 | 1 |
lineage3.1 | 3 |
lineage4.3.2.1 | 1 |
lineage4.7 | 1 |
lineage4.1.2 | 1 |
lineage6.1.1 | 2 |
lineage4.1.3 | 2 |
La1.2 | 1 |
lineage2 | 3 |
lineage3 | 2 |
lineage3.1.2 | 1 |
lineage4.6.1.1 | 2 |
lineage1.1.2 | 1 |
lineage4.8 | 2 |
lineage4.1 | 2 |
lineage4.6.2.2 | 1 |
lineage6.3.1 | 1 |
lineage6 | 1 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
La1.8.1 | 2 |
lineage4.5 | 1 |
lineage7;lineage2.2.1.2 | 1 |
lineage4.9;La3 | 1 |
lineage3;lineage2.2.1 | 1 |
lineage4.3.3 | 1 |
lineage2.2.1;La3 | 1 |
lineage4.9;lineage4.6.3 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage4.1.1.2 | 1 |
spoligotype | Count |
---|---|
None | 212 |
ID | Drug resistance | Lineage | Country iso2 | ERR2693239 | HR-TB | None | SRR5341302 | HR-TB | None | SRR5341330 | HR-TB | None | ERR2693231 | Other | None | SRR5341455 | Sensitive | lineage4 | None | ERR2693232 | Other | lineage4.9 | None | SRR5341470 | HR-TB | None | SRR6044790 | HR-TB | None | ERR2693257 | Other | None | ERR2693230 | Other | None | ERR2693254 | Other | None | SRR6044855 | Other | lineage4.9 | None | SRR6045399 | Other | None | SRR6045952 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6044890 | Other | lineage4.9 | None | SRR6045233 | HR-TB | None | ERR278594 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6046362 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046397 | Other | None | SRR6325444 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6046492 | Other | None | SRR6046514 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6325447 | HR-TB | None | SRR6789626 | Other | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6511621 | HR-TB | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR5311099 | HR-TB | None | ERR502532 | HR-TB | None | ERR294248 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR5311090 | HR-TB | None | SRR7496517 | Other | None | SRR7496509 | Other | None | ERR5311081 | HR-TB | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR7496523 | Other | lineage4.7 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR7535082 | Sensitive | lineage4 | None | ERR323053 | HR-TB | None | ERR323038 | HR-TB | None | ERR323041 | HR-TB | None | ERR323043 | HR-TB | None | ERR323039 | HR-TB | None | ERR323055 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323063 | HR-TB | None | ERR323085 | Sensitive | lineage4 | None | ERR1063883 | Sensitive | lineage4 | None | ERR1034652 | Other | None | ERR1035122 | Sensitive | None | ERR1063896 | Sensitive | None | ERR3283017 | HR-TB | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283032 | HR-TB | None | ERR3283024 | Other | None | ERR3283027 | HR-TB | None | ERR3797017 | Other | None | ERR3283036 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3468544 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3797014 | Other | None | ERR3797044 | Other | None | ERR3797061 | Other | None | ERR3797069 | Other | None | ERR3799304 | Other | lineage6.1.1 | None | ERR3797083 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR4024991 | Other | None | ERR4769457 | Other | lineage4.9 | None | ERR4188350 | HR-TB | None | ERR4407463 | HR-TB | None | ERR4797264 | Sensitive | None | ERR4769497 | HR-TB | La1.2 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4798099 | Other | None | ERR4798504 | Other | lineage3 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4799378 | Sensitive | lineage4 | None | ERR4811022 | HR-TB | None | ERR4800341 | Other | lineage3 | None | ERR4810741 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR4811105 | HR-TB | None | ERR6866022 | Other | None | ERR4811493 | HR-TB | None | ERR5336148 | Other | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6358837 | HR-TB | None | ERR6866639 | Other | None | ERR8976043 | HR-TB | None | ERR736839 | Other | None | ERR736865 | HR-TB | None | ERR736867 | HR-TB | None | ERR736874 | HR-TB | None | ERR751326 | Sensitive | lineage4 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR702406 | HR-TB | None | ERR736872 | Sensitive | lineage4 | None | ERR9786604 | Other | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9786569 | Other | lineage4.8 | None | ERR9117709 | HR-TB | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786440 | Other | lineage4.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786843 | Other | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9787165 | Other | lineage6 | None | ERR987722 | HR-TB | None | ERR9787197 | Other | None | ERR987733 | RR-TB | lineage4.6.1.1 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | SRR1169194 | Other | None | SRR1172857 | MDR-TB | None | SRR1172310 | HR-TB | None | SRR1172817 | HR-TB | None | SRR1173629 | Other | None | SRR1173153 | HR-TB | None | SRR1173400 | Other | None | SRR1172951 | Other | None | SRR1174897 | HR-TB | None | SRR1173778 | Other | None | SRR1196677 | HR-TB | lineage2 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1184294 | HR-TB | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1196566 | HR-TB | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1184380 | HR-TB | None | SRR1184388 | Other | None | SRR1196546 | HR-TB | None | SRR1196768 | MDR-TB | None | SRR12142341 | HR-TB | None | SRR13861566 | Other | lineage4.9 | None | SRR13861146 | Sensitive | lineage4.9 | None | SRR12416824 | HR-TB | None | SRR13861324 | Other | lineage4.9 | None | SRR1791696 | Other | La1.8.1 | None | SRR15368973 | Other | None | SRR1640750 | HR-TB | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR20969677 | HR-TB | lineage2 | None | SRR19303884 | HR-TB | None | SRR19304036 | HR-TB | None | SRR20970016 | Other | lineage2.2 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR1035239 | HR-TB | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR26159043 | Other | lineage4.9 | None | SRR25827497 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | SRR6325445 | HR-TB | None | SRR25827682 | Other | None | SRR21732980 | Other | lineage4.3.3 | None | SRR26937071 | MDR-TB | lineage2.2.1;La3 | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR4815604 | HR-TB | None | SRR3675465 | HR-TB | None | SRR3675221 | HR-TB | None | ERR161033 | HR-TB | None | SRR3675486 | HR-TB | None | SRR3675236 | HR-TB | None | SRR3675311 | Other | None | SRR3675234 | Other | None | ERR176740 | HR-TB | None | ERR4816999 | Other | None | SRR3675456 | HR-TB | None | ERR2229542 | Other | lineage4.8 | None | SRR3675555 | HR-TB | None | SRR3675545 | HR-TB | None | ERR2027263 | Other | lineage4 | None | SRR3675558 | HR-TB | None | ERR553132 | MDR-TB | lineage4.1.2.1 | None | SRR3675572 | Other | None | SRR3675571 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | SRR3742665 | HR-TB | None | SRR7496472 | Other | None | ERR4818021 | Other | La1.8.1 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR234659 | HR-TB | None | SRR5341453 | Sensitive | None |
---|