lineage | Count |
---|---|
122 | |
lineage4.9 | 8 |
lineage4 | 27 |
lineage4.2.1.1 | 1 |
lineage2.2.1 | 8 |
La2 | 1 |
lineage4.3.2.1 | 1 |
lineage4.1.3 | 2 |
lineage2 | 3 |
lineage3 | 2 |
La1 | 1 |
lineage3.1.2 | 1 |
lineage4.1.2.1 | 2 |
lineage4.6.2.2 | 1 |
lineage6.3.1 | 1 |
lineage4.3.2 | 1 |
lineage4.6.1.1 | 1 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
lineage2.2.1.2 | 1 |
lineage4.4.1.1 | 1 |
lineage3.1 | 2 |
lineage4.3.3 | 1 |
lineage1.2.1.2 | 1 |
La1.8.1 | 2 |
lineage4.5 | 1 |
lineage2.2 | 3 |
lineage6.3;lineage2.2.1 | 1 |
lineage4.1.1 | 1 |
lineage4.8;La3 | 1 |
lineage4.3.4.2.1 | 1 |
spoligotype | Count |
---|---|
None | 200 |
ID | Drug resistance | Lineage | Country iso2 | SRR5341470 | HR-TB | None | SRR6045503 | HR-TB | None | SRR6045526 | HR-TB | None | SRR6045892 | Sensitive | None | SRR6046133 | HR-TB | None | SRR5535933 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6044790 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6046066 | HR-TB | None | SRR6045399 | Other | None | SRR6046305 | Other | lineage4.9 | None | SRR6046362 | HR-TB | None | ERR4830353 | Other | None | SRR6046540 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | SRR6046824 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6511621 | HR-TB | None | ERR502524 | HR-TB | La2 | None | SRR6789626 | Other | None | SRR6832787 | RR-TB | lineage2.2.1 | None | SRR6832249 | Other | lineage2.2.1 | None | SRR6982437 | Sensitive | lineage4.3.2.1 | None | ERR294266 | HR-TB | None | ERR502532 | HR-TB | None | ERR067681 | HR-TB | None | ERR502889 | Other | None | SRR7496517 | Other | None | SRR7535086 | Other | None | ERR323107 | Other | lineage4 | None | ERR323039 | HR-TB | None | ERR323053 | HR-TB | None | ERR323066 | Sensitive | lineage4 | None | ERR323043 | HR-TB | None | ERR1035122 | Sensitive | None | ERR108471 | HR-TB | lineage4 | None | ERR1063857 | HR-TB | None | ERR1035157 | Other | lineage4.9 | None | ERR3283027 | HR-TB | None | ERR137286 | Sensitive | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR3283014 | HR-TB | None | ERR3283028 | Other | None | ERR133986 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3445501 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3439432 | Other | None | ERR3283051 | Other | lineage4.9 | None | ERR3283047 | HR-TB | None | ERR3797065 | MDR-TB | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR3797036 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3797048 | HR-TB | None | ERR4769474 | HR-TB | lineage4 | None | ERR3797063 | HR-TB | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR3797087 | Sensitive | lineage4 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4407463 | HR-TB | None | ERR3797069 | Other | None | ERR403298 | HR-TB | lineage4 | None | ERR4797264 | Sensitive | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797474 | Other | None | ERR4798504 | Other | lineage3 | None | ERR4798406 | HR-TB | None | ERR4798262 | HR-TB | La1 | None | ERR4811022 | HR-TB | None | ERR4810741 | HR-TB | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4800341 | Other | lineage3 | None | ERR702406 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR5336148 | Other | None | ERR6359045 | HR-TB | None | ERR6358991 | HR-TB | None | ERR736834 | Sensitive | lineage4 | None | ERR9787197 | Other | None | ERR736848 | HR-TB | None | ERR736865 | HR-TB | None | ERR736867 | HR-TB | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786671 | Other | None | ERR9787139 | Other | lineage6.3.1 | None | ERR736835 | HR-TB | None | ERR736839 | Other | None | ERR736856 | HR-TB | lineage4 | None | ERR736874 | HR-TB | None | ERR9117709 | HR-TB | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9119669 | HR-TB | None | ERR987722 | HR-TB | None | ERR987733 | RR-TB | lineage4.6.1.1 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | SRR1172310 | HR-TB | None | SRR1158918 | Sensitive | lineage4 | None | SRR1169194 | Other | None | SRR1172234 | Other | None | SRR1172728 | MDR-TB | None | SRR1172817 | HR-TB | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1173118 | Other | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR1172857 | MDR-TB | None | SRR1172951 | Other | None | SRR1173629 | Other | None | SRR1173153 | HR-TB | None | SRR1173363 | HR-TB | None | SRR1173484 | Other | lineage4 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173166 | Other | lineage4.9 | None | SRR1173384 | Other | lineage4 | None | SRR1173400 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1175074 | MDR-TB | None | SRR1173778 | Other | None | SRR1174897 | HR-TB | None | SRR1184381 | MDR-TB | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1184294 | HR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184372 | MDR-TB | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1184388 | Other | None | SRR1184380 | HR-TB | None | SRR1196546 | HR-TB | None | SRR1196566 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR1196768 | MDR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR15368973 | Other | None | SRR12142341 | HR-TB | None | SRR12416824 | HR-TB | None | SRR19303884 | HR-TB | None | SRR1791747 | Other | La1.8.1 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR20970016 | Other | lineage2.2 | None | SRR19304036 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | ERR4815604 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | SRR3675465 | HR-TB | None | ERR158583 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675221 | HR-TB | None | SRR3675488 | HR-TB | None | SRR3675502 | Other | None | SRR3675222 | Other | None | SRR3675236 | HR-TB | None | SRR3675501 | HR-TB | None | ERR176740 | HR-TB | None | ERR4816999 | Other | None | SRR3675510 | Other | None | ERR2027263 | Other | lineage4 | None | ERR212121 | HR-TB | None | ERR212001 | HR-TB | None | SRR3675550 | Other | None | ERR4817060 | RR-TB | None | SRR3675572 | Other | None | SRR3675574 | HR-TB | None | ERR502912 | Other | lineage2.2.1 | None | SRR3742665 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR4816466 | HR-TB | None | ERR4818021 | Other | La1.8.1 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR234659 | HR-TB | None | ERR1035162 | Other | None | ERR4819131 | Other | lineage4 | None | ERR4818615 | Other | None | SRR5341418 | Other | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR5341308 | Sensitive | lineage4 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341300 | Other | lineage4 | None | ERR1035138 | MDR-TB | None | SRR5341302 | HR-TB | None | SRR5341333 | HR-TB | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341467 | Other | lineage4 | None |
---|