lineage | Count |
---|---|
175 | |
La1.8.1 | 2 |
lineage3 | 2 |
lineage2.2 | 6 |
lineage7;lineage2.2.1.2 | 1 |
lineage4.5 | 1 |
lineage4.9 | 16 |
lineage4.1 | 2 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage4.3.4.2.1 | 1 |
lineage3;lineage2.1 | 1 |
lineage4.3 | 1 |
lineage4 | 20 |
lineage2.2.1 | 4 |
lineage4;lineage1.1.2 | 1 |
lineage4;lineage1.1 | 1 |
lineage4.1.2.1 | 3 |
lineage3.1 | 4 |
La2 | 1 |
lineage2 | 2 |
lineage4.9;La1.3 | 1 |
La1.2 | 1 |
La1.3 | 1 |
lineage3.1.2 | 1 |
lineage4.1.2.1.1 | 1 |
lineage4.6.2.2 | 1 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
lineage2.2.1.1 | 2 |
lineage4.3.3 | 1 |
spoligotype | Count |
---|---|
None | 256 |
ID | Drug resistance | Lineage | Country iso2 | SRR15368973 | Other | None | SRR1791747 | Other | La1.8.1 | None | SRR17658565 | Other | lineage3 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | ERR4815604 | HR-TB | None | ERR1035239 | HR-TB | None | SRR6325445 | HR-TB | None | SRR3675488 | HR-TB | None | SRR3675465 | HR-TB | None | ERR158583 | HR-TB | None | ERR161033 | HR-TB | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675486 | HR-TB | None | SRR3675501 | HR-TB | None | SRR3675222 | Other | None | SRR3675234 | Other | None | ERR176568 | Other | lineage4.3 | None | ERR176643 | HR-TB | None | SRR3675383 | HR-TB | None | SRR3675312 | HR-TB | lineage4 | None | SRR3675558 | HR-TB | None | SRR3675456 | HR-TB | None | ERR176740 | HR-TB | None | ERR176751 | HR-TB | None | SRR3675545 | HR-TB | None | ERR212001 | HR-TB | None | SRR3675550 | Other | None | ERR212033 | HR-TB | None | ERR212034 | HR-TB | None | SRR3675555 | HR-TB | None | ERR212121 | HR-TB | None | SRR3742665 | HR-TB | None | SRR3675571 | HR-TB | None | SRR3675574 | HR-TB | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR4816656 | HR-TB | None | ERR502912 | Other | lineage2.2.1 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR2446566 | Other | lineage4.1 | None | ERR234659 | HR-TB | None | ERR1035162 | Other | None | ERR4819322 | Other | lineage4;lineage1.1 | None | ERR4818929 | HR-TB | None | ERR2509673 | Other | lineage2.2.1 | None | SRR5341453 | Sensitive | None | SRR5341302 | HR-TB | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341418 | Other | None | SRR5341333 | HR-TB | None | SRR5341313 | HR-TB | None | ERR6359082 | Other | lineage4.9 | None | ERR2693230 | Other | None | SRR5341456 | Other | None | ERR2693231 | Other | None | SRR5341470 | HR-TB | None | ERR2693239 | HR-TB | None | SRR6045526 | HR-TB | None | ERR2693254 | Other | None | SRR6045503 | HR-TB | None | ERR2693257 | Other | None | SRR6045706 | Sensitive | lineage4 | None | SRR5535933 | HR-TB | None | SRR6045519 | HR-TB | None | SRR6045555 | HR-TB | None | ERR278594 | HR-TB | None | SRR6045010 | Other | lineage4 | None | ERR2693232 | Other | lineage4.9 | None | SRR6045233 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6046225 | HR-TB | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6044838 | Other | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6045399 | Other | None | SRR6046362 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6046299 | HR-TB | None | ERR4830353 | Other | None | SRR6046397 | Other | None | SRR6325444 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046492 | Other | None | SRR6046540 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6046802 | Other | lineage4 | None | SRR6325447 | HR-TB | None | SRR6046824 | HR-TB | None | ERR294248 | HR-TB | None | ERR4831117 | HR-TB | None | ERR502510 | Sensitive | lineage4 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR294266 | HR-TB | None | ERR5311090 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | ERR323036 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR5311099 | HR-TB | None | ERR502889 | Other | None | ERR502532 | HR-TB | None | ERR323038 | HR-TB | None | ERR5311081 | HR-TB | None | SRR7496509 | Other | None | ERR323039 | HR-TB | None | ERR323041 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323043 | HR-TB | None | ERR323053 | HR-TB | None | ERR323055 | HR-TB | None | ERR133825 | Sensitive | lineage4 | None | ERR067699 | HR-TB | lineage4 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1035157 | Other | lineage4.9 | None | ERR323063 | HR-TB | None | ERR323108 | HR-TB | lineage4 | None | ERR067681 | HR-TB | None | ERR1023525 | HR-TB | lineage4 | None | ERR1034652 | Other | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3283028 | Other | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283017 | HR-TB | None | ERR133986 | HR-TB | None | ERR323115 | Sensitive | lineage4 | None | ERR3283014 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3283024 | Other | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283031 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3445504 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3439432 | Other | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR3797016 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797017 | Other | None | ERR3797014 | Other | None | ERR3797064 | Sensitive | None | ERR3797046 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797048 | HR-TB | None | ERR3797061 | Other | None | ERR3797063 | HR-TB | None | ERR3797044 | Other | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797083 | HR-TB | None | ERR4188247 | HR-TB | None | ERR4024991 | Other | None | ERR403298 | HR-TB | lineage4 | None | ERR473332 | Other | lineage4 | None | ERR4188350 | HR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769452 | HR-TB | None | ERR4769552 | Other | La1.3 | None | ERR4798406 | HR-TB | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797474 | Other | None | ERR4798431 | HR-TB | None | ERR4811493 | HR-TB | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4811022 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR4799025 | Pre-XDR-TB | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4810741 | HR-TB | None | ERR6358837 | HR-TB | None | ERR5336148 | Other | None | ERR702404 | HR-TB | None | ERR6358991 | HR-TB | None | ERR6866639 | Other | None | ERR6359045 | HR-TB | None | ERR6866022 | Other | None | ERR736867 | HR-TB | None | ERR736835 | HR-TB | None | ERR736848 | HR-TB | None | ERR702406 | HR-TB | None | ERR736839 | Other | None | ERR736865 | HR-TB | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR736874 | HR-TB | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR9786604 | Other | None | ERR8976043 | HR-TB | None | ERR9119669 | HR-TB | None | ERR9786843 | Other | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | ERR990545 | Other | lineage3 | None | ERR987722 | HR-TB | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | SRR1169194 | Other | None | SRR1169306 | Other | None | SRR1172728 | MDR-TB | None | SRR1172310 | HR-TB | None | SRR1172146 | Sensitive | lineage4.9 | None | SRR1172234 | Other | None | SRR1172951 | Other | None | SRR1172817 | HR-TB | None | SRR1173778 | Other | None | SRR1173400 | Other | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173629 | Other | None | SRR1173118 | Other | None | SRR1173384 | Other | lineage4 | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1184294 | HR-TB | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1173788 | Other | None | SRR1174897 | HR-TB | None | SRR1180996 | HR-TB | lineage4 | None | SRR1183049 | Other | lineage2.2 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184372 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1184381 | MDR-TB | None | SRR1184388 | Other | None | SRR1196545 | HR-TB | lineage4.9 | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196494 | MDR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR1196566 | HR-TB | None | SRR1196546 | HR-TB | None | SRR1196768 | MDR-TB | None | SRR12142341 | HR-TB | None | SRR14782405 | HR-TB | None | SRR12416824 | HR-TB | None | SRR14801749 | Sensitive | None |
---|