Rv3547 - c.-163C>G
Drug resistance types
3 Sensitive
0 RR-TB
135 HR-TB
9 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
41 Other
lineage Counts
| lineage | Count |
|---|---|
| 125 | |
| lineage4.3.4 | 1 |
| lineage4 | 13 |
| lineage4.3.2 | 1 |
| La3 | 1 |
| lineage4.1.2.1 | 7 |
| lineage4.9 | 10 |
| lineage4.4.1.1 | 1 |
| lineage3.1 | 3 |
| lineage4.3.3 | 1 |
| lineage4.3.4.1 | 1 |
| lineage4.5 | 2 |
| lineage2 | 1 |
| lineage2.2.1 | 8 |
| lineage4.1 | 1 |
| lineage4.1.1 | 1 |
| lineage3;lineage2.1 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.3 | 1 |
| lineage4.1.1.3 | 1 |
| lineage2.2 | 2 |
| La1.8.1 | 2 |
| lineage4;lineage1.1 | 1 |
| La2 | 1 |
| La1 | 1 |
| La1.2 | 1 |
| lineage3.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 190 |
Geographic prevalence
Country level data for this variant is available for 5 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR6358837 | HR-TB | None | ERR6358991 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR702404 | HR-TB | None | ERR736865 | HR-TB | None | ERR736835 | HR-TB | None | ERR736867 | HR-TB | None | ERR736875 | HR-TB | lineage4 | None | ERR736874 | HR-TB | None | ERR9117709 | HR-TB | None | ERR8976043 | HR-TB | None | ERR702406 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | SRR1172234 | Other | None | ERR987722 | HR-TB | None | SRR1169249 | Other | La3 | None | SRR1169306 | Other | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR1169194 | Other | None | SRR1172728 | MDR-TB | None | SRR1172310 | HR-TB | None | SRR1172817 | HR-TB | None | SRR1172951 | Other | None | SRR1173118 | Other | None | SRR1173363 | HR-TB | None | SRR1173384 | Other | lineage4 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173400 | Other | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173629 | Other | None | SRR1184294 | HR-TB | None | SRR1174897 | HR-TB | None | SRR1175090 | Other | lineage4.9 | None | SRR1173706 | Other | lineage4.9 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1173778 | Other | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1196768 | MDR-TB | None | SRR1184381 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1184388 | Other | None | SRR1196546 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR12142341 | HR-TB | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR12416824 | HR-TB | None | SRR13423544 | Other | lineage4.5 | None | SRR13861305 | Other | lineage4.9 | None | SRR19304036 | HR-TB | None | SRR1640750 | HR-TB | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR13861699 | Sensitive | lineage4.9 | None | SRR15368973 | Other | None | SRR19303884 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | ERR4815604 | HR-TB | None | ERR176778 | HR-TB | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | ERR176751 | HR-TB | None | ERR176779 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR1035239 | HR-TB | None | SRR6325445 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | SRR3675221 | HR-TB | None | SRR3675465 | HR-TB | None | SRR3675482 | HR-TB | None | ERR161033 | HR-TB | None | SRR3675486 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675236 | HR-TB | None | ERR181824 | HR-TB | lineage4 | None | SRR3675387 | Sensitive | None | SRR3675280 | HR-TB | lineage4.9 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR176568 | Other | lineage4.3 | None | ERR176643 | HR-TB | None | SRR3675311 | Other | None | ERR176651 | HR-TB | None | ERR181887 | HR-TB | None | SRR3675383 | HR-TB | None | SRR3675456 | HR-TB | None | SRR3675545 | HR-TB | None | SRR3675510 | Other | None | ERR4816999 | Other | None | ERR4819051 | Other | lineage4 | None | SRR3675555 | HR-TB | None | ERR212125 | HR-TB | lineage4 | None | ERR234659 | HR-TB | None | ERR212033 | HR-TB | None | SRR3675558 | HR-TB | None | SRR3675572 | Other | None | ERR212121 | HR-TB | None | SRR3675574 | HR-TB | None | ERR212138 | HR-TB | lineage4 | None | SRR3675571 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR3742665 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR4818021 | Other | La1.8.1 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR2446563 | Other | lineage2.2.1 | nl | ERR3275299 | HR-TB | lineage4.1.2.1 | nl | ERR4819781 | Other | lineage2.2.1 | None | SRR5341302 | HR-TB | None | SRR5341333 | HR-TB | None | ERR4819322 | Other | lineage4;lineage1.1 | None | ERR2446137 | HR-TB | lineage4.1.2.1 | nl | SRR5341470 | HR-TB | None | SRR6045526 | HR-TB | None | ERR2693239 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6045952 | HR-TB | None | SRR6046210 | Other | lineage4 | None | SRR6046305 | Other | lineage4.9 | None | SRR6046066 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6046382 | HR-TB | lineage2.2.1 | None | ERR2517244 | HR-TB | lineage4.1.2.1 | nl | ERR278594 | HR-TB | None | SRR6046397 | Other | None | SRR6046514 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046540 | HR-TB | None | ERR294266 | HR-TB | None | ERR294248 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR323036 | HR-TB | None | SRR6789626 | Other | None | ERR323053 | HR-TB | None | ERR5311090 | HR-TB | None | ERR5311081 | HR-TB | None | SRR7496517 | Other | None | ERR323038 | HR-TB | None | ERR323039 | HR-TB | None | ERR323041 | HR-TB | None | ERR323045 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | ERR502524 | HR-TB | La2 | None | ERR502532 | HR-TB | None | ERR5311099 | HR-TB | None | ERR323043 | HR-TB | None | ERR323055 | HR-TB | None | ERR323063 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR1035157 | Other | lineage4.9 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1063859 | HR-TB | None | ERR1063862 | HR-TB | None | ERR1063858 | HR-TB | None | ERR3283017 | HR-TB | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283010 | Other | La1 | None | ERR3445501 | HR-TB | None | ERR3283021 | HR-TB | None | ERR3283041 | Other | lineage4.9 | None | ERR3283036 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3445503 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797043 | HR-TB | None | ERR3797083 | HR-TB | None | ERR3797069 | Other | None | ERR3797086 | Other | lineage4.9 | None | ERR4188247 | HR-TB | None | ERR387051 | HR-TB | None | ERR4188350 | HR-TB | None | ERR473332 | Other | lineage4 | None | ERR4407463 | HR-TB | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4810741 | HR-TB | None | ERR4811022 | HR-TB | None |
|---|
