Rv0006 - c.201C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
17 Sensitive
3 RR-TB
27 HR-TB
13 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
36 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.7;lineage4.9 | 5 |
| lineage4.9;lineage7 | 3 |
| lineage4.9 | 36 |
| lineage4.9;lineage9 | 2 |
| lineage3.1.2.2 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4.2.1 | 1 |
| lineage3 | 2 |
| lineage4.6.2.2 | 2 |
| lineage2.2.1 | 5 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| La3;lineage4.9 | 2 |
| lineage2.1;lineage4.9 | 2 |
| lineage2.2 | 2 |
| lineage4.1.2.1 | 3 |
| La1.7;M.canetti;lineage4.9 | 3 |
| lineage4.6.3;lineage4.9 | 1 |
| 3 | |
| lineage4.3.2;lineage4.9 | 1 |
| La2;lineage4.9 | 1 |
| lineage4.8 | 1 |
| lineage4.3.2.1 | 1 |
| lineage6.1.1 | 2 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| La1.7 | 1 |
| lineage4.3.4 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage3.1.2.1 | 1 |
| La1;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.5 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage4.9;lineage6.3 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 97 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR926162 | Sensitive | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR9786525 | Other | lineage4 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR17832802 | HR-TB | lineage3 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | SRR24256116 | MDR-TB | lineage2.2.1 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR28119827 | Other | La3;lineage4.9 | None | SRR29097026 | Other | lineage4.9 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR987722 | MDR-TB | None | SRR29539010 | Pre-XDR-TB | lineage2.2.1 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | SRR29096410 | Other | lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR1183049 | RR-TB | lineage2.2 | None | SRR6046210 | Other | lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR8692887 | Other | None | ERR4798504 | RR-TB | lineage3 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR926154 | Sensitive | lineage4.9 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR3675222 | Other | La1.7 | None | ERR3797029 | Other | lineage4.9 | None | ERR387051 | Other | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | ERR12057436 | MDR-TB | lineage2.2.1 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR3799304 | Other | lineage6.1.1 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR4829606 | Sensitive | lineage4.1.2.1 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR926163 | Other | lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | SRR5818433 | Sensitive | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | ERR11081736 | Sensitive | lineage4.5 | None | SRR1183111 | HR-TB | lineage4.9 | None | ERR176740 | Other | lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR9786843 | Other | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR6046611 | Sensitive | lineage4.9 | None |
|---|
